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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacccatataacaacaaattcaacaatatttggaaaccatgatatttatatttgaattgttaattatctaatttcatttatataatccactagTTTGTGGCTGCTACTCAACCAATCAATTCATTAGCCTTTGTATTTGATGGAGTGAACTATGGTGCTTCTGATTTTGCATATTCAGCATACTCTCTGGCAA

Basic information

species Glycine max
transcript GLYMA12G36620.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G36620.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv13s0064g00930.t01 (Vitis vinifera), 3'ss of exon 10
-----gtaacccatataacaa----caaattcaacaatatttggaaaccatgatatttatatttgaattgttaattatctaatttcatttatataatccactagTTTGTGGCTGCTACTCAACCAATCAATTCATTAGCCTTTGTATTTGATGGAGTGAACTATGGTGCTTCTGATTTTGCATATTCAGCATACTCTCTGGCAA
      |     | | |||||    |||||  |||| |||||   |    || | |||   ||| | |  ||  | |   || ||  |   | |   | || ||||| | || || || |||||||||||||  ||||||||||| || ||||||||||||| ||| || || |||||||||||| | ||||||||  ||    
aaaaactgttttaaaaaacaattatcaaatcaaacattattttttatgtttgctcttt---tttaactcattcttaactcaaatttttggctttcgactac-agTTTATCGCGGCGACCCAACCAATCAATTGCTTAGCCTTTGTTTTCGATGGAGTGAACTTTGGAGCATCGGATTTTGCATATACTGCATACTCCATG----

upper sequence: GLYMA12G36620.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv13s0064g00940.t01 (Vitis vinifera), 3'ss of exon 11
gtaacccatataacaacaaattcaaca-atatttggaaaccatgatatttatatttgaattgttaattatctaatttcatttatataatccactagTTTGTGGCTGCTACTCAACCAATCAATTCATTAGCCTTTGTATTTGATGGAGTGAACTATGGTGCTTCTGATTTTGCATATTCAGCATACTCTCTGGCAA
        |||  |  || ||  || |   ||||        | || |||  |  | |      | | |  || || |  || | | ||    |||||||| ||||| |||||||| || ||||| || |||||||| || || || ||||||| ||| || || |||||||||||||| ||||||||  ||    
-------gtatgtcc-catatctaatatgcatttttttcttttcattttttgagctcacgatcaactgaaatatttacccttttgtgat--gatagTTTGTTGCTGCAACTCAACCGATAAATTCTTTGGCCTTTGTCTTCGACGGCGTGAACTTTGGAGCATCGGATTTTGCATATTCTGCATACTCCATG----

upper sequence: GLYMA12G36620.1 (Glycine max), 3'ss of exon 12
lower sequence: PP1S88_225V6.1 (Physcomitrella patens), 3'ss of exon 10
----gtaacccatataacaacaaattcaacaatatttggaaaccatgatatttatatttgaat--tgttaattatctaatttcatttatataatccactagTTTGTGGCTGCTACTCAACCAATCAATTCATTAGCCTTTGTATTTGATGGAGTGAACTATGGTGCTTCTGATTTTGCATATTCAGCATACTCTCTGGCAA
    | | | | | |  | |  |  ||    ||    | |||  ||   |   |||  | |||  ||||  | |  |||  |   |  | | |  |   |||||||||||   |||||||||||||| |||||||| ||||| ||||||||  |  | ||||| || || || ||| | ||| | || |||||  ||    
tgtggcatcgcgtgtgccgatgaggtctcttatgcgagcaaagaatc-cagcaataagtaaatgttgtttttgagataacgttggtgctgttacactgcagTTTGTGGCTCTAACTCAACCAATCAACTCATTAGCATTTGTCTTTGATGGCATTCATTATGGAGCGTCAGACTTTCCTTATGCTGCTTACTCAATG----


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatatttatatttgaattgttaattatctaatttcatttatataatccactagTTTGTGGCTGCTACTCAACCAATCAATTCATTAGCCTTTGTATTTGATGGAGTGAACTATGGTGCTTCTGATTTTGCATATTCAGCATACTCTCTGGCAA
                           atctaat  putative branch site (score: 3)
     atttatatttgaattg  TA-rich tract