Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttatgactgttggctactatttttattttatatatattgaattttttatggacagtttctaatttgcagTGATCAGGGTAAAACCCTGAAAAGTGCTGGATGGGACTTCAGCATTGGTGGATCACAGGGTACTGGAACCTTTCGTAATGTTTCTCGACCACCTCAGTTT

Basic information

species Glycine max
transcript GLYMA12G35510.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G35510.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 13
gtaggttatgactgttggctactatttttattttatatatattgaattttttatggacagtttctaatttgcagTGATCAGGGTAAAACCCTGAAAAGTGCTGGATGGGACTTCAGCATTGGTGGATCACAGGGTACTGGAACCTTTCGTAATGTTTCTCGACCACCTCAGTTT
|| |||| |  |||    ||| |  ||| | |   |  ||| |   ||||| |   |     || ||| | ||||  |||||| |||||||||| || |||||||||||| |||||| || |||| |||||| |||| |||||| |||| | |||     |||||||||||  |
gtgggtt-tatctg--aactaatgcttt-actcatttcatagttggtttttgactaattaggtcaaatatacagTAGTCAGGGAAAAACCCTGAGAAATGCTGGATGGGATTTCAGCCTTAGTGGCTCACAGAGTACAGGAACCGTTCGAAGTGTCATAAGACCACCTCAGGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040250|gb|BM308544.1|BM308544
EST:     ACTGTAAAGGTGGCAAGAGATTTAAGAGGTGAAGAAAATAATCGACCCAG                         TGATCAGGGTAAAACCCTGAAAAGTGCTGGATGGGACTTCAGCATTGGTGG
genomic: ACTGTAAAGGTGGCAAGAGATTTAAGAGGTGAAGAAAATAATCGACCCAGgtaggttatg ... taatttgcagTGATCAGGGTAAAACCCTGAAAAGTGCTGGATGGGACTTCAGCATTGGTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactatttttattttatatatattgaattttttatggacagtttctaatttgcagTGATCAGGGTAAAACCCTGAAAAGTGCTGGATGGGACTTCAGCATTGGTGGATCACAGGGTACTGGAACCTTTCGTAATGTTTCTCGACCACCTCAGTTT
                                          ttctaat  putative branch site (score: 2)
                                         tttct  CT-rich tract
     tttttattttatatat  TA-rich tract