1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gttctgactcttcattttcatggtctgtttattattatttatttatttatttggataaatcttgaatggtctcttaatttatatgtaaacttggatgcagTTTAGAAGAAGGATAAAGGGGTGCATTGCATTTTGGACAAATGGGAGGTGTTGGGAACTTCGGCTTATACCAAAAAGGATGAGAATTGAGAAGTCAAGAG
species | Glycine max |
transcript | GLYMA12G32050.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGACCTAATGGATTATAG TTTAGAAGAAGGATAAAGGGGTGCATTGCATTTTGGACAAATGGGAGGTGTEST: gi|208024040|gb|GD823712.1|GD823712
genomic: GAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGACCTAATGGATTATAGgtaagaacgc ... ttggatgcagTTTAGAAGAAGGATAAAGGGGTGCATTGCATTTTGGACAAATGGGAGGTGT
EST: GAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGACCTAATGGATTATAG TTTAGAAGAAGGATAAAGGGGEST: gi|193701959|gb|FK635933.1|FK635933
genomic: GAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGACCTAATGGATTATAGgtaagaacgc ... ttggatgcagTTTAGAAGAAGGATAAAGGGG
EST: GAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGACCTAATGGATTATAG TTTAGAAGAAGGATAAAGGGGTGCATTGCEST: gi|120532424|gb|EH260557.1|EH260557
genomic: GAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGACCTAATGGATTATAGgtaagaacgc ... ttggatgcagTTTAGAAGAAGGATAAAGGGGTGCATTGC
EST: GAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGACCTAATGGATTATAG TTTAGAAGAAGGATAAAG
genomic: GAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGACCTAATGGATTATAGgtaagaacgc ... ttggatgcagTTTAGAAGAAGGATAAAG
tttatttggataaatcttgaatggtctcttaatttatatgtaaacttggatgcagTTTAGAAGAAGGATAAAGGGGTGCATTGCATTTTGGACAAATGGGAGGTGTTGGGAACTTCGGCTTATACCAAAAAGGATGAGAATTGAGAAGTCAAGAG
tcttaat putative branch site (score: 3)
tcttaatttatatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctgactcttcattttcatggtctgtttattattatttatttatttatttggataaatcttgaatggtctcttaatttatatgtaaacttggatgcagTTTAGAAGAAGGATAAAGGGGTGCATTGCATTTTGGACAAATGGGAGGTGTTGGGAACTTCGGCTTATACCAAAAAGGATGAGAATTGAGAAGTCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- -ctgactc
- - - - - - - - - catggtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgg