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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taatagacaagccaatctatacatgtgggatataattgctctattacatttggatgcttcgatgaacactaatcagacttgtaataattttatttggcagTTCTGCTCTGTTGGGTAACACCGGATTTTGAGCTTTATGCTGCATTTGATCCCCTTGCAGACAAGGTATTGTTTTTGCTTGCCTTCATCATTTCTCAAAT

Basic information

species Glycine max
transcript GLYMA12G29450.3
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G29450.3 (Glycine max), 3'ss of exon 12
lower sequence: AT2G28390.1 (Arabidopsis thaliana), 3'ss of exon 12
taatagacaagccaatctatacatgtgggatataattgctctattacatttggatgcttcgatgaacactaatcagacttgtaataattttatttggcagTTCTGCTCTGTTGGGTAACACCGGATTTTGAGCTTTATGCTGCATTTGATCCCCTTGCAGACAAGGTATTGTTTTTGCTTGCCTTCATCATTTCTCAAAT
   ||     |    |  | ||||||  || |  |  | |      | | | | |||     |||  |  | |     |||| |||| ||      |||| ||| || |||||||| ||||| |||||||| || ||||| ||||||||||| ||||||||||||                                   
--gtaagttcgaatttgcacacatgtttgacacgaaagatgagaatcttctcgctgcggaactgactaaaagttga--ttgtgataactt------gcagCTCTTCTATGTTGGGTCACACCAGATTTTGAACTCTATGCAGCATTTGATCCACTTGCAGACAAG-----------------------------------

upper sequence: GLYMA12G29450.3 (Glycine max), 3'ss of exon 12
lower sequence: Vv06s0004g02820.t01 (Vitis vinifera), 3'ss of exon 12
-taatagacaagccaatctatacatgtgggatataattgctctattacatttggatgcttcgatgaacactaatcagactt-gtaataattttatttggcagTTCTGCTCTGTTGGGTAACACCGGATTTTGAGCTTTATGCTGCATTTGATCCCCTTGCAGACAAGGTATTGTTTTTGCTTGCCTTCATCATTTCTCAAAT
 |  |          | | |||  |       ||  || |  |    |  |||  ||  |       | || || |   |   || |  |||||| |||||||||| ||||| ||||| || ||||| ||||| |||||||| ||||||||||| |||||||| |||                                   
atggtttttgcagttacccataattaatcttcatggttacattccatcgcttgactg--taagactcctctgatgaagttccatattgcttttatgtggcagTTCTCCTCTGCTGGGTTACCCCGGAGTTTGAACTTTATGCAGCATTTGATCCACTTGCAGATAAG-----------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatttggatgcttcgatgaacactaatcagacttgtaataattttatttggcagTTCTGCTCTGTTGGGTAACACCGGATTTTGAGCTTTATGCTGCATTTGATCCCCTTGCAGACAAGGTATTGTTTTTGCTTGCCTTCATCATTTCTCAAAT
                     cactaat  putative branch site (score: 2)
                                          ttttattt  putative PPT
                             agacttgtaataattt  TA-rich tract