Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtaaccaaaacacaatgatagtggccattttagcacatacaagagtgaatgacaccagatttatctctttaatttcctgtttgttgttcattcatgcagAACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATACCAGAGCATGCGCGTAAACAGAACTTATTTATGGCTTTGCACACCTAGCAATGCCCCCC

Basic information

species Glycine max
transcript GLYMA12G28730.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193587866|gb|FK543489.1|FK543489
EST:     CCTTCCTAATGGTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGG                         AACTTTCTGGTGTACCTCCTGATGTCATCAATCGGCTTATTCCAGAGCATG
genomic: CCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGgtgagtttaa ... attcatgcagAACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATACCAGAGCATG
EST: gi|6719212|gb|AW306859.1|AW306859
EST:     CCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTNTAAACCTCAGG                         AACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATACCAGAGCATG
genomic: CCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGgtgagtttaa ... attcatgcagAACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATACCAGAGCATG
EST: gi|151408852|gb|EV278660.1|EV278660
EST:     CCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGG                         AACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATACCAGAGCATG
genomic: CCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGgtgagtttaa ... attcatgcagAACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATACCAGAGCATG
EST: gi|9903227|gb|BE612195.1|BE612195
EST:     CCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTCTAAACCTCAGG                         AACTTTCTGGTGTACCCTCTGATGTCATCAATCGGCTTATACCAGAGCATG
genomic: CCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGgtgagtttaa ... attcatgcagAACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATACCAGAGCATG
EST: gi|13479623|gb|BG508966.1|BG508966
EST:     CCTTCCTAATGGTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGG                         AACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATTCCAGAGCATG
genomic: CCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGgtgagtttaa ... attcatgcagAACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATACCAGAGCATG
EST: gi|7589778|gb|AW705545.1|AW705545
EST:     CCTTCCTAATGGTCGACCACTTCCTCCACTGTTTAATTTTAAACCTGAGG                         AACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATTCCAGAGCATG
genomic: CCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTTTAAACCTCAGGgtgagtttaa ... attcatgcagAACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATACCAGAGCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaatgacaccagatttatctctttaatttcctgtttgttgttcattcatgcagAACTTTCTGGTGTACCCCCTGATGTCATCAATCGGCTTATACCAGAGCATGCGCGTAAACAGAACTTATTTATGGCTTTGCACACCTAGCAATGCCCCCC
                      ctttaat  putative branch site (score: 4)
                                          ttcattc  putative PPT
              atttatctctttaatt  TA-rich tract