1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atatctaaatttcattttgctttgtatatgaaactcttcaacctattcttgcttctactattctactaattttaatgttttattttacttgacaactcagTTGCAGTTTACAAGAAGGATCAACGGGACGCATTGCATTGTGGAAAATTAAAAAGTTGGTGTTGAACCTCGGCTTATATTACAAAGACGGGGAGAAGTCA
species | Glycine max |
transcript | GLYMA12G10710.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTGTCTGGTGAACCTGCTTGATCAGAGCTTCAAGACTTTTGGATTCTGCG TTGCAGTTTACAAGAAGGATCAEST: gi|213603548|gb|DB982037.1|DB982037
genomic: TTGTCTGGTGAACCTGCTTGATCAGAGCTTCAAGACTTTTGGATTCTGCGgtacgttcat ... gacaactcagTTGCAGTTTACAAGAAGGATCA
EST: AACCTGCTTGATCAGAGCTTCAAGACTTTTGGGGGC-ACTG TTGCAGTTTACAAGAAGGATCAACGGGACGCATTGCATTGTGGAAAATTAEST: gi|51335583|gb|CO979449.1|CO979449
genomic: AACCTGCTTGATCAGAGCTTCAAGACTTTTGGATTCTGC-Ggtacgttcat ... gacaactcagTTGCAGTTTACAAGAAGGATCAACGGGACGCATTGCATTGTGGAAAATTA
EST: TTGTCTGGTGAACCTGCTTGATCAGAGCTTCAAGACTTTTGGATTCTGCG TTGCAGTTTACAAGAAGGATCAACGGGACGCATTGCATTGTGGAAAATTAA
genomic: TTGTCTGGTGAACCTGCTTGATCAGAGCTTCAAGACTTTTGGATTCTGCGgtacgttcat ... gacaactcagTTGCAGTTTACAAGAAGGATCAACGGGACGCATTGCATTGTGGAAAATTAA
ttcttgcttctactattctactaattttaatgttttattttacttgacaactcagTTGCAGTTTACAAGAAGGATCAACGGGACGCATTGCATTGTGGAAAATTAAAAAGTTGGTGTTGAACCTCGGCTTATATTACAAAGACGGGGAGAAGTCA
ttctactattctacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatctaaatttcattttgctttgtatatgaaactcttcaacctattcttgcttctactattctactaattttaatgttttattttacttgacaactcagTTGCAGTTTACAAGAAGGATCAACGGGACGCATTGCATTGTGGAAAATTAAAAAGTTGGTGTTGAACCTCGGCTTATATTACAAAGACGGGGAGAAGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - -tgctttg
- - - - - - - - - - - - - - - - -ctcttca