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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccactgttgagaataaatttatttccaatgtggaaatggtttactatcattgcttttcctaaatatcctcactttaaattttcacagGCATCTGAGGTGTTAAAGCACCCTTATTTGCAGCCTTACTTGGATCAATATCGTCCATCTTTCAGTCCTCCAACCTCCTGTTCTCCTGAAAAACCAATTT

Basic information

species Glycine max
transcript GLYMA12G09910.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5058284|gb|AI736760.1|AI736760
EST:     AAACACTGATAAAGGGCATGCTAAGAAAAAATCCTGAGCATCGGCCAACA                         GCATCTGAGGTGTTAAAGCACCCTTATTTGC
genomic: AAACACTGATAAAGGGCATGCTAAGAAAAAATCCTGAGCATCGGCCAACAgtaagccact ... attttcacagGCATCTGAGGTGTTAAAGCACCCTTATTTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaatggtttactatcattgcttttcctaaatatcctcactttaaattttcacagGCATCTGAGGTGTTAAAGCACCCTTATTTGCAGCCTTACTTGGATCAATATCGTCCATCTTTCAGTCCTCCAACCTCCTGTTCTCCTGAAAAACCAATTT
                                 tcctcac  putative branch site (score: 2)
                                              ttttcac  putative PPT
                                    tcactttaaatttt  TA-rich tract