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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aactaattccaaacatgttagctccatttaaattattgattaaaagatcacaaaaaaaaaaaaaaaaccatactgacacccttttcctttggttcaacagGACATTGATAAGTGATGATAACTCATGCCAAACAACCACGGAATTGCAAATGGTTCAATCTTCTCAAAATCATTTCTCAAGTTTCTGAAATACATATATA

Basic information

species Glycine max
transcript GLYMA12G09430.3
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254320975|gb|GR827424.1|GR827424
EST:     TATGGCCGTCTTAGAGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGA                         GACATTGATAAGTGATGATAACTCATGCCAAACAACCACGGAATTGCAAAT
genomic: TATGGCCGTCTTAGAGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAgtaagattca ... ggttcaacagGACATTGATAAGTGATGATAACTCATGCCAAACAACCACGGAATTGCAAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatcacaaaaaaaaaaaaaaaaccatactgacacccttttcctttggttcaacagGACATTGATAAGTGATGATAACTCATGCCAAACAACCACGGAATTGCAAATGGTTCAATCTTCTCAAAATCATTTCTCAAGTTTCTGAAATACATATATA
                         tactgac  putative branch site (score: 1)
                                 cccttttcctttggtt  CT-rich tract
      aaaaaaaaaaaaaaaa  TA-rich tract