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...acataaagattgtgcaggtatagagaccaaatgaataattaaaccatctatattaatggatttctcggaaaatagtttaattcatactcttgttttgcagCTTATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGATCCGCGACAGAGAAAACCAATCATAACAAAAGCAATGGAATTGCTTGGCT
species | Glycine max |
transcript | GLYMA12G06990.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GTGAATTTACAATGCTAGAACTTGCTGAGACAGTGAAGGAG CTTATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGATEST: gi|254347936|gb|GR854185.1|GR854185
genomic: GTGAATTTACAATGCTAGAACTTGCTGAGACAGTGAAGGAGgttagttcaa ... tgttttgcagCTTATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGAT
EST: GTGAATTTACAATGCTAGAACTTGCTGAGACAGTGAAGGAG CTTATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGATEST: gi|192315616|gb|FK007444.1|FK007444
genomic: GTGAATTTACAATGCTAGAACTTGCTGAGACAGTGAAGGAGgttagttcaa ... tgttttgcagCTTATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGAT
EST: GTGAATTTACAATGCTAGAACTTGCTGAGACAGTGAAGGAG CTTATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGAT
genomic: GTGAATTTACAATGCTAGAACTTGCTGAGACAGTGAAGGAGgttagttcaa ... tgttttgcagCTTATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGAT
atctatattaatggatttctcggaaaatagtttaattcatactcttgttttgcagCTTATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGATCCGCGACAGAGAAAACCAATCATAACAAAAGCAATGGAATTGCTTGGCT
ctcttgtttt CT-rich tract
aaaatagtttaattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acataaagattgtgcaggtatagagaccaaatgaataattaaaccatctatattaatggatttctcggaaaatagtttaattcatactcttgttttgcagCTTATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGATCCGCGACAGAGAAAACCAATCATAACAAAAGCAATGGAATTGCTTGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - tgcaggt
- - - - - - - - - - - - - - - - - - - - - -ccatcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catactc