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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaataaattatacatgactgttatgctattacatcattttaactagatgctgcatttctgacttctaagaatatgcactgacgtaaactatccttgcagATTGTCATATTGGTCATCATGGTTTCCATCATTTTTGCTTATCTGTCTGCTAACCACCATAATAGCTAGTGTAAGTTCTGTTGTTAATTTTAATGTACGG

Basic information

species Glycine max
transcript GLYMA12G04220.3
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208195438|gb|GD993957.1|GD993957
EST:     GAAATCTTACATTGTGAATGATGAAAGTGGATATGGCTCAACCATG                         ATTGTCATATTGGTCATCATGGTTTCCATCATTTTTGCTTATCTGTCTGCT
genomic: GAAATCTTACATTGTGAATGATGAAAGTGGATATGGCTCAACCATGgtacgttttt ... atccttgcagATTGTCATATTGGTCATCATGGTTTCCATCATTTTTGCTTATCTGTCTGCT
EST: gi|207798680|gb|GD769093.1|GD769093
EST:     GAAATCTTACATTGTGAATGATGAA-GTGGATATGGCTCAACCATG                         ATTGTCATATTGGTCATCATGGTTTCCATCATTTTTGCTTATCTGTCTGCT
genomic: GAAATCTTACATTGTGAATGATGAAAGTGGATATGGCTCAACCATGgtacgttttt ... atccttgcagATTGTCATATTGGTCATCATGGTTTCCATCATTTTTGCTTATCTGTCTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatgctgcatttctgacttctaagaatatgcactgacgtaaactatccttgcagATTGTCATATTGGTCATCATGGTTTCCATCATTTTTGCTTATCTGTCTGCTAACCACCATAATAGCTAGTGTAAGTTCTGTTGTTAATTTTAATGTACGG
                               cactgac  putative branch site (score: 2)
                                           ctatcctt  putative PPT
                     taagaatat  TA-rich tract