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...aatagtttgaacttggaacaactagttggataatttgttcatttgcttgagtccaaaaactaaacatttgtcactttcccacttgttcttgtcaattcagGTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAG
species | Glycine max |
transcript | GLYMA12G03640.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGACTGGAATCATGCGTCAAATGGAAGCTTTTAGAGCAGGGTTTAATCAG GTTTT-GACATCTCATCTTTACAAATTTTT-CTCCCCAAGAAEST: gi|9259017|gb|BE347164.1|BE347164
genomic: AGACTGGAATCATGCGTCAAATGGAAGCTTTTAGAGCAGGGTTTAATCAGgttatatgtt ... gtcaattcagGTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAA
EST: AGACTGGAATCATGCGTCAAATGGAAGCTTTTAGAGCAGGGTTTAATCAG GTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACEST: gi|15815265|gb|BI787540.1|BI787540
genomic: AGACTGGAATCATGCGTCAAATGGAAGCTTTTAGAGCAGGGTTTAATCAGgttatatgtt ... gtcaattcagGTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTAC
EST: AGACTGGAATCATGCGTCAAATGGAAGCTTTTAGAGCAGGGTTTAATCAG GTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACEST: gi|192301647|gb|FG997603.1|FG997603
genomic: AGACTGGAATCATGCGTCAAATGGAAGCTTTTAGAGCAGGGTTTAATCAGgttatatgtt ... gtcaattcagGTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTAC
EST: AGACTGGAATCATGCGTCAAATGGAAGCTTTTAGAGCAGGGTTTAATCAG GTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACEST: gi|192327460|gb|FK017817.1|FK017817
genomic: AGACTGGAATCATGCGTCAAATGGAAGCTTTTAGAGCAGGGTTTAATCAGgttatatgtt ... gtcaattcagGTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTAC
EST: AGACTGGAATCATGCGTCAAATGGGAGCTTTTAGAGCAGGGTTTAATCAG GTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACEST: gi|9899529|gb|BE608497.1|BE608497
genomic: AGACTGGAATCATGCGTCAAATGGAAGCTTTTAGAGCAGGGTTTAATCAGgttatatgtt ... gtcaattcagGTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTAC
EST: AGACTGGAATCATGCGTCAAATGGAAGCTGTTAGAGCAGGGTTTAATCAT GTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACEST: gi|254331304|gb|GR845883.1|GR845883
genomic: AGACTGGAATCATGCGTCAAATGGAAGCTTTTAGAGCAGGGTTTAATCAGgttatatgtt ... gtcaattcagGTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTAC
EST: GGAATCATGCGTCAAATGGAAGCTTTTAGAGCAGGGTTTAATCAG GTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTAC
genomic: GGAATCATGCGTCAAATGGAAGCTTTTAGAGCAGGGTTTAATCAGgttatatgtt ... gtcaattcagGTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTAC
cttgagtccaaaaactaaacatttgtcactttcccacttgttcttgtcaattcagGTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAG
aactaaa putative branch site (score: 2)
ttcttgtc putative PPT
aaaaactaaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatagtttgaacttggaacaactagttggataatttgttcatttgcttgagtccaaaaactaaacatttgtcactttcccacttgttcttgtcaattcagGTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - -gaacaac
- - - - - - - - - - - - - - - - - - - - - -tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - ccaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaaaca