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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctattcatgaagtgcaacattttctcatgatctttctttttgatgcctaacctaatccgttacacttgaacaatgctgatcactttttgatgttatagATCTGAGGAGGAAAGAGAAACATGGGGCTTTTTGAAGGTTATGCTTGAAGATGATGGGACTGCACGGACAAAACTTCTCTCACATCTTGGTTTCAATGTA

Basic information

species Glycine max
transcript GLYMA12G01290.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G01290.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G152963_T01 (Zea mays), 3'ss of exon 12
gtgagttctattcatgaagtgcaacattttctcatgatctttctttttgatgcctaacctaatccgttacacttgaacaatgctgatcactttttgatgttatagATCTGAGGAGGAAAGAGAAACATGGGGCTTTTTGAAGGTTATGCTTGAAGATGATGGGACTGCACGGACAAAACTTCTCTCACATCTTGGTTTCAATGTA
                          | |   |||  || ||   |   |   || || |   |    | |||      |||| |||  ||  |||||     |||||||| ||||| ||||||||||||||||| |||| | ||||| |||| || |  |    || | |||||||| | ||  | |||||||| ||| |   |
-------------------------gtatgtacatc-tcctttagtagaactactgacatttgcatgaagactaactttatgc-gatgcctgcttgat----cagATCTGATGAGGAGAGAGAAACATGGGGCTTCTTGATGATTATGTTTGAGGACGGGGATTTTGTAAGGACAAAATTGCTTGCTCATCTTGGCTTCGAACCA

upper sequence: GLYMA12G01290.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv13s0158g00140.t01 (Vitis vinifera), 3'ss of exon 12
--gtgagttctattcatgaagtgcaacattttctcatgatctttctttttgatgcct---------aacctaatccgttacacttgaacaatgctgatcacttt--ttgatgttatagATCTGAGGAGGAAAGAGAAACATGGGGCTTTTTGAAGGTTATGCTTGAAGATGATGGGACTGCACGGACAAAACTTCTCTCACATCTTGGTTTCAATGTA
   ||     ||| ||  ||  | || ||||     | || | | ||||| || | |          | || |   |||||  ||| |     ||| ||  ||   |||     | ||||||  ||| || ||||||||||||||||| |||||||||||| ||||||||||||| || ||| || |||| || ||| | || ||||||||  || | 
gtatgccacttatcca-aaaacgaaatatttctctttcatttatttttttaatccattctagtaatgaactgacttgttac-tttgcatttctctgttcttttgagttgtctgaacagATCTTCGGATGACAGAGAAACATGGGGCTTCTTGAAGGTTATGTTTGAAGATGATGGAACAGCAAGGTCAAAGCTGCTCACTCACCTTGGTTTTGATATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcctaacctaatccgttacacttgaacaatgctgatcactttttgatgttatagATCTGAGGAGGAAAGAGAAACATGGGGCTTTTTGAAGGTTATGCTTGAAGATGATGGGACTGCACGGACAAAACTTCTCTCACATCTTGGTTTCAATGTA
                                       ctttttg  CT-rich tract
                                        tttttgatgttata  TA-rich tract