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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactcagcaaacattgattttatgtacaagaattttgaggcattacaatagagaaccaaagaagaaatcccatctgctttgctttatttatccagcatggcagcatgaaattcagataattaattgactattaccttttcagGATATTTGCCGAAGGTGATATTAACAACAGTGTCACTGGAGCTACTGAGCAACCTCTTGGTATTTTGCCTCATCAGATTCGTGGTTCCCTTTCTCAATTT

Basic information

species Glycine max
transcript GLYMA12G01250.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254317616|gb|GR826600.1|GR826600
EST:     TCAGCCCTTGCAGTTGAACTTTTAGTAGGGATTTTGCATCATCCTCAAGG                         GATATTTGCCGAAGGTGATATTAACAACAGTGTCACTGGAGCTACTGAGCA
genomic: TCAGCCCTTGCAGTTGAACTTTTAGTAGGGATTTTGCATCATCCTCAAGGgtaactcagc ... accttttcagGATATTTGCCGAAGGTGATATTAACAACAGTGTCACTGGAGCTACTGAGCA
EST: gi|209696729|gb|BW672908.1|BW672908
EST:     GCATCATCCTCAAGG                         GATATTTGCCGAAGGTGATATTAACAACAGTGTCACTGGAGCTACTGAGCA
genomic: GCATCATCCTCAAGGgtaactcagc ... accttttcagGATATTTGCCGAAGGTGATATTAACAACAGTGTCACTGGAGCTACTGAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatccagcatggcagcatgaaattcagataattaattgactattaccttttcagGATATTTGCCGAAGGTGATATTAACAACAGTGTCACTGGAGCTACTGAGCAACCTCTTGGTATTTTGCCTCATCAGATTCGTGGTTCCCTTTCTCAATTT
                                  aattgac  putative branch site (score: 3)
                                           ttaccttttc  putative PPT
                 atgaaattcagataat  TA-rich tract