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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttatatatattctgatttggttctgttgccttcattgttctttattttacattgagtttgacaattttctcaactttgctcctagGATTCTGCATTTTCAAATCCAAAGGCACAGTCATATTTTGCGGAGGTGATATCATCATCTCCATCTATGAATCATACAATTCCACCATCTGTTGTTCCCC

Basic information

species Glycine max
transcript GLYMA11G38160.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13788137|gb|BG650729.1|BG650729
EST:     GACAGAGTGATGCAAAGGCAGTTCAACGTGCATTTTCCATGAGCAAAAAG                         GATTCTGCATTTTCAAATCCAAAGGCACAGTCATATTTTGCGGAGGTGATA
genomic: GACAGAGTGATGCAAAGGCAGTTCAACGTGCATTTTCCATGAGCAAAAAGgtttatatat ... ttgctcctagGATTCTGCATTTTCAAATCCAAAGGCACAGTCATATTTTGCGGAGGTGATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattgttctttattttacattgagtttgacaattttctcaactttgctcctagGATTCTGCATTTTCAAATCCAAAGGCACAGTCATATTTTGCGGAGGTGATATCATCATCTCCATCTATGAATCATACAATTCCACCATCTGTTGTTCCCC
                         gtttgac  putative branch site (score: 4)
                                           ctttgctcct  putative PPT
       ttctttattttacatt  TA-rich tract