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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatatatatttgccagacattgagggtgagcgaccatgtcacaataaagaattctttgaagttattctcttctaactcctagagttgtatctctgtgtagGAGAAGTCTACGTTGCTTTCTTCAATCTAAGTGAACAGAAGAGGGTAATATCTGCAAAAACATCAGACCTGGCTAAGGTTCTTCCTGGCAGAGACTTCAG

Basic information

species Glycine max
transcript GLYMA11G37760.3
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208164352|gb|GD960240.1|GD960240
EST:     TACTATTAATTCTGGTGGCTTGCACTCTTGGATTGCTACAGGAAGAAAAG                         GAGAAGTCTACGTTGCTTTCTTCAATCTAAGTGAACAGAAGAGGGTAATAT
genomic: TACTATTAATTCTGGTGGCTTGCACTCTTGGATTGCTACAGGAAGAAAAGgtatgatgct ... ctctgtgtagGAGAAGTCTACGTTGCTTTCTTCAATCTAAGTGAACAGAAGAGGGTAATAT
EST: gi|17519483|gb|BM188525.1|BM188525
EST:     TACTATTAATTCTGGTGGCTTGCACTCTTGGATTGCTACAGGAAGAAAAG                         GAGAAGTCTACGTTGCTTTCTTCAATCTAAGTGAACAGAAGAGGGTAATAT
genomic: TACTATTAATTCTGGTGGCTTGCACTCTTGGATTGCTACAGGAAGAAAAGgtatgatgct ... ctctgtgtagGAGAAGTCTACGTTGCTTTCTTCAATCTAAGTGAACAGAAGAGGGTAATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagaattctttgaagttattctcttctaactcctagagttgtatctctgtgtagGAGAAGTCTACGTTGCTTTCTTCAATCTAAGTGAACAGAAGAGGGTAATATCTGCAAAAACATCAGACCTGGCTAAGGTTCTTCCTGGCAGAGACTTCAG
                        ttctaac  putative branch site (score: 1)
                                          tatctct  putative PPT
             aagttatt  TA-rich tract