1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gcacaactttcttcaatatttccacttatttacctttttgttacttttgttaatttttgttgtgaacttgtattataacagGTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATACAATTGCTGCATTTAAAGGAAGAACTATTCATACTTACCACAG
species | Glycine max |
transcript | GLYMA11G37250.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GACCAATATGATTATCCAG GTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATACEST: gi|151394452|gb|EV264323.1|EV264323
genomic: GACCAATATGA-TATCCAGgcacaacttt ... attataacagGTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATAC
EST: CGGCTGCAATAGACAGTTGTTTGACAGTTGCAGACCAATATGATATCCAG GTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATACAEST: gi|16278014|gb|BI942681.1|BI942681
genomic: CGGCTGCAATAGACAGTTGTTTGACAGTTGCAGACCAATATGATATCCAGgcacaacttt ... attataacagGTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATACA
EST: CGGCTGCAATAGACAGTTGTTTGACAGTTGCAGACCAATATGATATCCAG GTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATACA
genomic: CGGCTGCAATAGACAGTTGTTTGACAGTTGCAGACCAATATGATATCCAGgcacaacttt ... attataacagGTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATACA
tatttacctttttgttacttttgttaatttttgttgtgaacttgtattataacagGTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATACAATTGCTGCATTTAAAGGAAGAACTATTCATACTTACCACAG
tgttaat putative branch site (score: 3)
tttttgttacttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacaactttcttcaatatttccacttatttacctttttgttacttttgttaatttttgttgtgaacttgtattataacagGTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATACAATTGCTGCATTTAAAGGAAGAACTATTCATACTTACCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC