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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaagattctaatgtcatggtgctcttttctctttcaaaataagtttgcatggcagtagataacattcttcatttcagGTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAG

Basic information

species Glycine max
transcript GLYMA11G15900.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209699170|gb|BW656185.1|BW656185
EST:     GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG                         GTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCC
genomic: GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAGgtagaagatt ... ttcatttcagGTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCC
EST: gi|213613458|gb|DB974627.1|DB974627
EST:     GGGAAAATTGCTGACATGTATACTTCATTACAGTCATCTAG                         GTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCC
genomic: GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAGgtagaagatt ... ttcatttcagGTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCC
EST: gi|16995570|gb|BM084942.1|BM084942
EST:     GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG                         GTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCC
genomic: GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAGgtagaagatt ... ttcatttcagGTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCC
EST: gi|31476129|gb|CD418157.1|CD418157
EST:     GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG                         GTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCC
genomic: GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAGgtagaagatt ... ttcatttcagGTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCC
EST: gi|208119311|gb|GD914220.1|GD914220
EST:     GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG                         GTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCC
genomic: GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAGgtagaagatt ... ttcatttcagGTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCC
EST: gi|254338024|gb|GR849656.1|GR849656
EST:     GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG                         GTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCC
genomic: GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAGgtagaagatt ... ttcatttcagGTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCC
EST: gi|10255205|gb|BE822971.1|BE822971
EST:     GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG                         GTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCC
genomic: GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAGgtagaagatt ... ttcatttcagGTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCC
EST: gi|254338023|gb|GR849655.1|GR849655
EST:     GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG                         GTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCC
genomic: GGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAGgtagaagatt ... ttcatttcagGTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttttctctttcaaaataagtttgcatggcagtagataacattcttcatttcagGTCTTATGTGTATTCAGTAGCTCGGGATTGTGACAACGGAAAAGTTGACCCAAAG
                                  agataac  putative branch site (score: 3)
                                          ttcttcatttc  CT-rich tract
         tttcaaaataagttt  TA-rich tract