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...ttatgaaggtatagaaattaaatgaataattaaactcgcctatattaatgaatttctcggaaaatagtttctaattcatactcttgtggtcgatttgcagCTAATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGATCCGCGACAGAGAAAACCAATTATAACAAAAGCAATGGAATTGCTTGGCT
species | Glycine max |
transcript | GLYMA11G15020.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GTGAATTTACAATGCTTGAACTTGCTGAGACAGTGAAGGAG CTAATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGATEST: gi|7233417|gb|AW568763.1|AW568763
genomic: GTGAATTTACAATGCTTGAACTTGCTGAGACAGTGAAGGAGgttagttcaa ... cgatttgcagCTAATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGAT
EST: GTGAATTTACAATGCTTGAACTTGCTGAGACAGTGAAGGAG CTAATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGATEST: gi|192301458|gb|FG994082.1|FG994082
genomic: GTGAATTTACAATGCTTGAACTTGCTGAGACAGTGAAGGAGgttagttcaa ... cgatttgcagCTAATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGAT
EST: GTGAATTTACAATGCTTGAACTTGCTGAGACAGTGAAGGAG CTAATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGAT
genomic: GTGAATTTACAATGCTTGAACTTGCTGAGACAGTGAAGGAGgttagttcaa ... cgatttgcagCTAATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGAT
taatgaatttctcggaaaatagtttctaattcatactcttgtggtcgatttgcagCTAATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGATCCGCGACAGAGAAAACCAATTATAACAAAAGCAATGGAATTGCTTGGCT
ttctaat putative branch site (score: 2)
aaaatagtttctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatgaaggtatagaaattaaatgaataattaaactcgcctatattaatgaatttctcggaaaatagtttctaattcatactcttgtggtcgatttgcagCTAATTAATCCAGATGTGGAGATAAAGGTAGTGGAGAACACTCCTGATGATCCGCGACAGAGAAAACCAATTATAACAAAAGCAATGGAATTGCTTGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
-tatgaag
- - - - - - - aaattaaa
- - - - - - - - - - - - - - - - - ctcgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catactc