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gtagctacacaaaataacccaagcttgttgattactattatttttttgtcagcatatatttatgttcaagcaataaagtattgatagtggttttgaatgatatccagATGACAGGCCAGAATATGCCTCTGTTCAAGCAATTCTTTATGGTCCTTATCTTCTTGCGGGTCATACAACTGGTGTTGATTGGGATCTTAAAGCTGGGGC
species | Glycine max |
transcript | GLYMA11G14000.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCTGACCCTTCAGCTGCCCCTTACCGTAAGGACAGAGGCCATAAAAG ATGACAGGCCAGAATATGCCTCTGTTCAAGCAATTCTTTATGGTCCTTATCEST: gi|254314048|gb|GR831677.1|GR831677
genomic: GCTGACCCTTCAGCTGCCCCTTACCGTAAGGACAGAGGCCATAAAAGgtagctacac ... tgatatccagATGACAGGCCAGAATATGCCTCTGTTCAAGCAATTCTTTATGGTCCTTATC
EST: GCTGACCCTTCAGCTGCCCCTTACCGTAAGGACAGAGGCCATAAAAG ATGACAGGCCAGAATATGCCTCTGTTCAAGCAATTCTTTATGGTCCTTATCEST: gi|11687556|gb|BF595232.1|BF595232
genomic: GCTGACCCTTCAGCTGCCCCTTACCGTAAGGACAGAGGCCATAAAAGgtagctacac ... tgatatccagATGACAGGCCAGAATATGCCTCTGTTCAAGCAATTCTTTATGGTCCTTATC
EST: CAAGCTGACCCTTCAGCTGCCCCTTACCGTAAGGACAGAGGCCATAAAAG ATGACAGGCCAGAATATGCCTCTGTTCAAGCAATTCTTTATGGTCCTTATC
genomic: CAAGCTGACCCTTCAGCTGCCCCTTACCGTAAGGACAGAGGCCATAAAAGgtagctacac ... tgatatccagATGACAGGCCAGAATATGCCTCTGTTCAAGCAATTCTTTATGGTCCTTATC
catatatttatgttcaagcaataaagtattgatagtggttttgaatgatatccagATGACAGGCCAGAATATGCCTCTGTTCAAGCAATTCTTTATGGTCCTTATCTTCTTGCGGGTCATACAACTGGTGTTGATTGGGATCTTAAAGCTGGGGC
tattgat putative branch site (score: 3)
aataaagtattgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagctacacaaaataacccaagcttgttgattactattatttttttgtcagcatatatttatgttcaagcaataaagtattgatagtggttttgaatgatatccagATGACAGGCCAGAATATGCCTCTGTTCAAGCAATTCTTTATGGTCCTTATCTTCTTGCGGGTCATACAACTGGTGTTGATTGGGATCTTAAAGCTGGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG