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...aatagttggaacttggaaaaactagtttgatgatttgttcatttgcttgagtccaaaaactaaacatttgtcacttgcccacttgttcttttcaattcagGTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAG
species | Glycine max |
transcript | GLYMA11G11490.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGACTGGAATCATGCGTCAAATGGAAGCATTTAGAGCAGGGTTCAATCAG GTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACEST: gi|11275017|gb|BF325341.1|BF325341
genomic: AGACTGGAATCATGCGTCAAATGGAAGCATTTAGAGCAGGGTTCAATCAGgttatatgct ... ttcaattcagGTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTAC
EST: AGACTGGAATCATGCGTCAAATGGAAGCATTTAGAGCAGGGTTCAATCAG GTTTTTGACATCTCATCTTTACAAATTGTTTCTCCCCAAGAACTGGATTACEST: gi|8282699|gb|BE020260.1|BE020260
genomic: AGACTGGAATCATGCGTCAAATGGAAGCATTTAGAGCAGGGTTCAATCAGgttatatgct ... ttcaattcagGTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTAC
EST: GACTGGAATCATGCGTCAAATGGAAGCATGTAGAGCAGGGTTCAATCANG GTNTT-GACATCTCATCTTTACAAAEST: gi|208249826|gb|GE048697.1|GE048697
genomic: GACTGGAATCATGCGTCAAATGGAAGCATTTAGAGCAGGGTTCAATCA-Ggttatatgct ... ttcaattcagGTTTTTGACATCTCATCTTTACAAA
EST: AGACTGGAATCATGCGTCAAATGGAAGCTTTTAGAGCAGGGTTTAATCAG GTTTTTGACATCTCATCTTTACTAATTTT
genomic: AGACTGGAATCATGCGTCAAATGGAAGCATTTAGAGCAGGGTTCAATCAGgttatatgct ... ttcaattcagGTTTTTGACATCTCATCTTTACAAATTTT
cttgagtccaaaaactaaacatttgtcacttgcccacttgttcttttcaattcagGTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAG
aactaaa putative branch site (score: 2)
cccacttgttcttttc putative PPT
aaaaactaaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatagttggaacttggaaaaactagtttgatgatttgttcatttgcttgagtccaaaaactaaacatttgtcacttgcccacttgttcttttcaattcagGTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG