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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacattttcatcagaattattacttgtaatgtacacgttccattttcaatctgtgattatttgcacaactgagttgaaattttgtcgtgcagAGGAGGTGGGCAACACAGCTGCCTTCTTAGCATCACCTTTGGCATCTGCTATCACTGGTACTGTTCTATACGTTGACAATGGTCTGAATGCTATGGGTGT

Basic information

species Glycine max
transcript GLYMA11G10770.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G10770.1 (Glycine max), 3'ss of exon 12
lower sequence: LOC_Os09g10600.1 (Oryza sativa), 3'ss of exon 12
-gtaacattttcatcagaattattacttgtaatgtacacgttccattttcaatctgtgattatttgcacaactgagttgaaattttgtcgtgcagAGGAGGTGGGCAACACAGCTGCCTTCTTAGCATCACCTTTGGCATCTGCTATCACTGGTACTGTTCTATACGTTGACAATGGTCTGAATGCTATGGGTGT
    | |||  | ||       || | | || ||   | |     || |  | |   | | | ||  | | ||   || | ||   ||    |||| || ||||| |||||||| || ||||||||||| || ||||||||||| ||||||||  |   | | || ||||||||||| || ||| | |||||  |
gtcgaaattaacttctttcagtttgcctctattggg-atgcctatttatgcaccaaaggtcacttataaagctttatttatat---gttcaacagATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGCCGTTGGCATCTGCAATCACTGGATCAACTATCTATGTTGACAATGGGCTCAATACAATGGGACT

upper sequence: GLYMA11G10770.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 3'ss of exon 12
--------gtaacattttcatcagaattattacttgtaatgtacacgttccattttcaatctgtgattatttgcacaactgagttgaa---attttgtcgtgcagAGGAGGTGGGCAACACAGCTGCCTTCTTAGCATCACCTTTGGCATCTGCTATCACTGGTACTGTTCTATACGTTGACAATGGTCTGAATGCTATGGGTGT
         | | |      |||    | |   || ||   | | | || |||| |  ||       ||    ||    | |  ||||   ||    | |  |||| |||||||| ||||| ||||||||||| ||||||||| |||||||||| ||||||||| ||||  ||||||| || || ||||||||||| ||||||||
gtgggttactgaaaaccctttcatgcctttggtttata---tgctcatttcattatttattgtcctctaccatcatcgttaatctgaataaatcaaatggaacagATGAGGTGGGGAACACTGCTGCCTTCTTGGCATCACCTCTGGCATCTGCCATCACTGGTGCTGTCATATACGTCGATAACGGTCTGAATGCAATGGGTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15287567|gb|BI471458.1|BI471458
EST:     GATCGATTACTCATCAGCCAATGCACCTCTACAGAAAGAACTATCAGCAG                         AGGAGGTGGGCAACACAGCTGCCTTCTTAGCATCACCTTTGGCATCTGCTA
genomic: GATCGATTACTCATCAGCCAATGCACCTCTACAGAAAGAACTATCAGCAGgtaacatttt ... tgtcgtgcagAGGAGGTGGGCAACACAGCTGCCTTCTTAGCATCACCTTTGGCATCTGCTA
EST: gi|209721948|gb|BW680083.1|BW680083
EST:     GATCGATTACTCATCAGCCAATGCACCTCTACAGAAAGAACTATCAGCAG                         AGGAGGTGGGCAACACAGCTGCCTTCTTAGCATCACCTTTGGCATCTGCTA
genomic: GATCGATTACTCATCAGCCAATGCACCTCTACAGAAAGAACTATCAGCAGgtaacatttt ... tgtcgtgcagAGGAGGTGGGCAACACAGCTGCCTTCTTAGCATCACCTTTGGCATCTGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccattttcaatctgtgattatttgcacaactgagttgaaattttgtcgtgcagAGGAGGTGGGCAACACAGCTGCCTTCTTAGCATCACCTTTGGCATCTGCTATCACTGGTACTGTTCTATACGTTGACAATGGTCTGAATGCTATGGGTGT
                                          ttttgtc  CT-rich tract
                                    ttgaaatttt  TA-rich tract