1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cttactaatgcattccatatttaaactctttggtttgtacatgattcatctggaatactatgttgttattcgtccctttaacacaattttatgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGACACTGCATGGGCAGTTGTTTGTTCGTGTCCCATTTGAACATGCAGAAT
species | Glycine max |
transcript | GLYMA11G09370.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGEST: gi|193710860|gb|FK647347.1|FK647347
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGEST: gi|207710244|gb|GD689710.1|GD689710
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: CACCTTTCAAAAAG GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGEST: gi|193547493|gb|FK501430.1|FK501430
genomic: CACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGEST: gi|193541489|gb|FK499185.1|FK499185
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGEST: gi|208154105|gb|GD954402.1|GD954402
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGEST: gi|193706504|gb|FK642273.1|FK642273
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGEST: gi|208190742|gb|GD991390.1|GD991390
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: GGGAGCCTGAACATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG GTTGTCAGCTTGCCCTCAAGAAEST: gi|193635471|gb|FK584824.1|FK584824
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAA
EST: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGEST: gi|208165847|gb|GD964185.1|GD964185
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGG
EST: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGEST: gi|207719655|gb|GD702154.1|GD702154
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG GTTGACAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGEST: gi|193371198|gb|FK336851.1|FK336851
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTC-AAAAG GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGEST: gi|22523112|gb|BU081923.1|BU081923
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGEST: gi|14259145|gb|BG882053.1|BG882053
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGEST: gi|208073736|gb|GD869053.1|GD869053
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: ACACCTTTCAAAAAG GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGEST: gi|193389319|gb|FK353952.1|FK353952
genomic: ACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGEST: gi|31464043|gb|CD406071.1|CD406071
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: GGGAGCCTGAGCATCCCTACAATCCTTGGGGTGTGACACCTTTCAAAAAG TTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGEST: gi|207827796|gb|GD800389.1|GD800389
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGEST: gi|209718163|gb|BW657809.1|BW657809
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGEST: gi|192294436|gb|FG987365.1|FG987365
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
EST: GGGAGCCTGAGCATCCCAACAATCCTTGGAGTGTGACACCTTTCAAAAAG GTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
genomic: GGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGgtatgttttc ... atgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTG
tcatctggaatactatgttgttattcgtccctttaacacaattttatgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGACACTGCATGGGCAGTTGTTTGTTCGTGTCCCATTTGAACATGCAGAAT
ctttaac putative branch site (score: 3)
tttaacacaattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttactaatgcattccatatttaaactctttggtttgtacatgattcatctggaatactatgttgttattcgtccctttaacacaattttatgaattcagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGACACTGCATGGGCAGTTGTTTGTTCGTGTCCCATTTGAACATGCAGAAT
- - - - -gcattcc
- - - - - - - - - - - - - - - tggtttg
- - - - - - - - - - - - - - - - - - -tacatga