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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatctatctctttcaaatcatatggttgcccttatattggatgatcttgttttggagtgatgaaagatttttacttgaaatatatgaaacaatttgttagaagaaaattgtgactggcatttgatgtgaatttcttataatgattaatattagtttatatcatataatagtttctaattgatttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCAAGTAACCCCTTTGGTTCTACTCTTGTATATGGTTATCAAAATATTGCCT

Basic information

species Glycine max
transcript GLYMA11G07910.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07910.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv04s0023g02970.t01 (Vitis vinifera), 3'ss of exon 12
gtgatctatctctttcaaatcatatggttgcccttatattggatgatcttgttttggagtgatgaaagatttttacttgaaatatatgaaacaatttgttaga-agaaaattgtgactggcatttgatgtgaatttcttata-atgattaatattagtttatatcatataatagtttctaattgatttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCAAGTAACCCCTTTGGTTCTACTCTTGTATATGGTTATCAAAATATTGCCT
                                                                                        ||   |||  ||    | | | ||     | ||   |  |  |  | | || |  ||| || | ||||   |   |   |||| ||     || |   |  | |||||||| |||||||| ||||| || || || || ||||| ||||| ||  |||  || || ||||| |||||| |||| ||||||||||||||| |||| |
----------------------------------------------------------------------------------------aagtgattcattccctatatagtttcaggttgctccttctccgtttctgttcttcatgcttcaaatta---tggctttaataaaagaaatgaact---tcctgtagGAAATCCTTGGGGACTGTGGCCGTGCAGCTATTCAAACGCAAGGTTCTACAAACAATCCATTTGGATCTACTTTTGTGTATGGTTATCAAAATGTTGCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11687754|gb|BF595430.1|BF595430
EST:     ACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|51343377|gb|CO984110.1|CO984110
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|18039193|gb|BM307487.1|BM307487
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|192324841|gb|FK015352.1|FK015352
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGC
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGG-ATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGC
EST: gi|254331134|gb|GR843253.1|GR843253
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|213597190|gb|DB981582.1|DB981582
EST:     CAGCAAACAGAGGGTGGA-TACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: CAGCAAACAGAGGGT-TATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|5666923|gb|AI930959.1|AI930959
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|9984165|gb|BE658273.1|BE658273
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|18720306|gb|BM523249.1|BM523249
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|120533133|gb|EH261266.1|EH261266
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|254331133|gb|GR843252.1|GR843252
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|120533498|gb|EH261631.1|EH261631
EST:     ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
EST: gi|11689775|gb|BF597451.1|BF597451
EST:     ACACCTAGCACCAAATGGGAACAAGTTAAG                         GAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA
genomic: ACACCTAGCACCAAATGGGAACAAGTTAAGgtgatctatc ... atttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataatgattaatattagtttatatcatataatagtttctaattgatttttttagGAAATACTTGGGGATTGTGGGCGAGCTGCCATCCAAACACAAGGCTCAGCAAGTAACCCCTTTGGTTCTACTCTTGTATATGGTTATCAAAATATTGCCT
                                              ttttttt  CT-rich tract
     tgattaatattagttt  TA-rich tract