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gtataaacaaaataggacaaatttatgtgtcaaattctgcgaatataattgagctagtctccgtttcacataaaagaacttggctgttttttcttatttctttcaatttcttttagGGCATTCTCTTGATATTCTTGCTCGAATTCCTTTGTGGAAGGATGGTCTTGATTATCGACATGGTACTGGTCATGGAATTGGGTCCTATTTGAATGTTCA
species | Glycine max |
transcript | GLYMA11G06900.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTGEST: gi|208114732|gb|GD913029.1|GD913029
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaacaa ... tttcttttagGGCATTCTCTTGATATTCTTGCTCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: CACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG GGCATTCTCTTGATATTCTTGCTCGAATTCCTTTGTGGAAGGATGGTCTTGEST: gi|207832058|gb|GD805108.1|GD805108
genomic: CACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaacaa ... tttcttttagGGCATTCTCTTGATATTCTTGCTCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaacaa ... tttcttttagGGCATTCTCTTGATATTCTTGCTCGAATTCCTTTGTGGAAGGATGGTCTTG
cgtttcacataaaagaacttggctgttttttcttatttctttcaatttcttttagGGCATTCTCTTGATATTCTTGCTCGAATTCCTTTGTGGAAGGATGGTCTTGATTATCGACATGGTACTGGTCATGGAATTGGGTCCTATTTGAATGTTCA
ctgttttttcttattt CT-rich tract
ttttttcttatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaacaaaataggacaaatttatgtgtcaaattctgcgaatataattgagctagtctccgtttcacataaaagaacttggctgttttttcttatttctttcaatttcttttagGGCATTCTCTTGATATTCTTGCTCGAATTCCTTTGTGGAAGGATGGTCTTGATTATCGACATGGTACTGGTCATGGAATTGGGTCCTATTTGAATGTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA