1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gataaaaatcgtaaaacaatgacgtactcatttgacgcagataatgatcgtgatggtttatctttaatattgttgcatggggatatatctgttttgacagAATGGGGGATTAAGATTTACGAAACCGCTGTAGTCGGGGATCCTTAAAGCAGTCATGGTACAGGCTTTGTGCATGGGCCGTGTGTTGGTGATATAGGAAC
species | Glycine max |
transcript | GLYMA11G03420.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATTTAATGAAGACTCTACCGATCCGTTAGGTGCATCTTAATTTGGTTCAG AATGGGGGATTAAGATTTACGAAACCGCTGTAGTCGGGGATCCTTAAAGCAEST: gi|57574707|gb|CX547682.1|CX547682
genomic: ATTTAATGAAGACTCTACCGATCCGTTAGGTGCATCTTAATTTGGTTCAGgtaaccttac ... gttttgacagAATGGGGGATTAAGATTTACGAAACCGCTGTAGTCGGGGATCCTTAAAGCA
EST: ATTTAATGAAGACTCTACCGATCCGTTAGGTGCATCTTAATTTGGTTCAG AATGGGGGATTAAGATTTACGAAACCGCTGTAGTCGGGGATCCTTAAAGCAEST: gi|57574396|gb|CX547371.1|CX547371
genomic: ATTTAATGAAGACTCTACCGATCCGTTAGGTGCATCTTAATTTGGTTCAGgtaaccttac ... gttttgacagAATGGGGGATTAAGATTTACGAAACCGCTGTAGTCGGGGATCCTTAAAGCA
EST: ATTTAATGAAGACTCTACCGATCCGTTAGGTGCATCTTAATTTGGTTCAG AATGGGGGATTAAGATTTACGAAACCGCTGTAGTCGGGGATCCTTAAAGCA
genomic: ATTTAATGAAGACTCTACCGATCCGTTAGGTGCATCTTAATTTGGTTCAGgtaaccttac ... gttttgacagAATGGGGGATTAAGATTTACGAAACCGCTGTAGTCGGGGATCCTTAAAGCA
gatcgtgatggtttatctttaatattgttgcatggggatatatctgttttgacagAATGGGGGATTAAGATTTACGAAACCGCTGTAGTCGGGGATCCTTAAAGCAGTCATGGTACAGGCTTTGTGCATGGGCCGTGTGTTGGTGATATAGGAAC
ctttaat putative branch site (score: 4)
tctgtttt putative PPT
tttatctttaatattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gataaaaatcgtaaaacaatgacgtactcatttgacgcagataatgatcgtgatggtttatctttaatattgttgcatggggatatatctgttttgacagAATGGGGGATTAAGATTTACGAAACCGCTGTAGTCGGGGATCCTTAAAGCAGTCATGGTACAGGCTTTGTGCATGGGCCGTGTGTTGGTGATATAGGAAC
-ataaaaa
- - - - - - - - caatgac
- - - - - - - - - - - - - - - - - - - - - - - - -gtgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgg