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...tcacgtggttacatattaacgatgaaatgaggatgaattgtgtcttttggagtttgattgtgacataatttaaaagaggatttactttgtcgatcaacagGTGCATACTGATAACCCGGATGGACTCTTCAGGATACTGTCATCATCTTTCCAATTCCAGGGAGGCAAGATCTGAGTTTACAAATGTGCTCTCTTGTAAT
species | Glycine max |
transcript | GLYMA11G01670.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGAAGGAGGTGGAGTTGAAATGCATGTCCTTGAAGATGCTGGCCCACTGG GTGCATACTGATAACCCGGATGGACTCTTCAGGATACTGTCATCATCTTTEST: gi|209722602|gb|BW682691.1|BW682691
genomic: GGAAGGAGGTGGAGTTGAAATGCATGTCCTTGAAGATGCTGG-CCACTGGgtatgtacta ... cgatcaacagGTGCATACTGATAACCCGGATGGACTCTTCAGGATACTGTCATCATCTTT
EST: AGGAAGGAGGTGGAGTTGAAATGCATGTCCTTGAAGATGCTGGCCACTGG GTGCATACTGATAACCCGGATGGACTCTTCAGGATACTGTCATCATCTTTCEST: gi|16346287|gb|BI971882.1|BI971882
genomic: AGGAAGGAGGTGGAGTTGAAATGCATGTCCTTGAAGATGCTGGCCACTGGgtatgtacta ... cgatcaacagGTGCATACTGATAACCCGGATGGACTCTTCAGGATACTGTCATCATCTTTC
EST: AGGAAGGAGGTGGAGTTGAAATGCATGTCCTTGAAGATGCTGGCCACTGG GTGCATACTGATAACCCGGATGGACTCTTCAGGATACTGTCATCATCTTTC
genomic: AGGAAGGAGGTGGAGTTGAAATGCATGTCCTTGAAGATGCTGGCCACTGGgtatgtacta ... cgatcaacagGTGCATACTGATAACCCGGATGGACTCTTCAGGATACTGTCATCATCTTTC
tttggagtttgattgtgacataatttaaaagaggatttactttgtcgatcaacagGTGCATACTGATAACCCGGATGGACTCTTCAGGATACTGTCATCATCTTTCCAATTCCAGGGAGGCAAGATCTGAGTTTACAAATGTGCTCTCTTGTAAT
gtttgat putative branch site (score: 5)
ctttgtc putative PPT
tgacataatttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacgtggttacatattaacgatgaaatgaggatgaattgtgtcttttggagtttgattgtgacataatttaaaagaggatttactttgtcgatcaacagGTGCATACTGATAACCCGGATGGACTCTTCAGGATACTGTCATCATCTTTCCAATTCCAGGGAGGCAAGATCTGAGTTTACAAATGTGCTCTCTTGTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
-cacgtgg
- - - - - - - - - - - - - - gaggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gattgtg