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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttcttcaaatattttaaggtttcattcacattcctcagttacaagcaattcagtcatctaagttttttttgtcatgttcctctgcaagGTTGAGGATGCTATTGTGCAAGCATTAGCCCAACAGCGACGTCCAAATTCTGCTCGACAATTAGTCTCAG

Basic information

species Glycine max
transcript GLYMA10G44630.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57573966|gb|CX546941.1|CX546941
EST:     AAAGTATGCTTTCAGTTGAAATGGGACTAAAGGAGCTTGCTTCTTTAAAG                         GTTGAGGATGCTATTGTGCAAGCATTAGCCCAACAGCGACGTCCAAATTCT
genomic: AAAGTATGCTTTCAGTTGAAATGGGACTAAAGGAGCTTGCTTCTTTAAAGgttttcttca ... cctctgcaagGTTGAGGATGCTATTGTGCAAGCATTAGCCCAACAGCGACGTCCAAATTCT
EST: gi|58015739|gb|CX702481.1|CX702481
EST:     AAAGTATGCTTTCAGTTGAAATGGGACTAAAGGAGCTTGCTTCTTTAAAG                         GTTGAGGATGCTATTGTGCAAGCATTAGCCCAACAGCGACGTCCAAATTCT
genomic: AAAGTATGCTTTCAGTTGAAATGGGACTAAAGGAGCTTGCTTCTTTAAAGgttttcttca ... cctctgcaagGTTGAGGATGCTATTGTGCAAGCATTAGCCCAACAGCGACGTCCAAATTCT
EST: gi|18690854|gb|BM519710.1|BM519710
EST:     AAAGTATGCTTTCAGTTGAAATGGGACTAAAGGAGCTTGCTTCTTTAAAG                         GTTGAGGATGCTATTGTGCAAGCATTAGCCCAACAGCGACGTCCAAATTCT
genomic: AAAGTATGCTTTCAGTTGAAATGGGACTAAAGGAGCTTGCTTCTTTAAAGgttttcttca ... cctctgcaagGTTGAGGATGCTATTGTGCAAGCATTAGCCCAACAGCGACGTCCAAATTCT
EST: gi|58018947|gb|CX705689.1|CX705689
EST:     AAAGTATGCTTTCAGTTGAAATGGGACTAAAGGAGCTTGCTTCTTTAAAG                         GTTGAGGATGCTATTGTGCAAGCATTAGCCCAACAGCGACGTCCAAATTCT
genomic: AAAGTATGCTTTCAGTTGAAATGGGACTAAAGGAGCTTGCTTCTTTAAAGgttttcttca ... cctctgcaagGTTGAGGATGCTATTGTGCAAGCATTAGCCCAACAGCGACGTCCAAATTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcagttacaagcaattcagtcatctaagttttttttgtcatgttcctctgcaagGTTGAGGATGCTATTGTGCAAGCATTAGCCCAACAGCGACGTCCAAATTCTGCTCGACAATTAGTCTCAG
                             ttttttttgtcatgtt  CT-rich tract
                      atctaagtttttttt  TA-rich tract