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...taacccgtacaaatctagaattccctagttactagtgtattcttaacctggttaatgggttgtggcgcggttatttaatgagaaatgtttaattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCACGGAGATGCCAATCTTGCTGTTGATGACTTTTTAGCACGAGCACCTTTAT
species | Glycine max |
transcript | GLYMA10G43870.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAA GTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCACEST: gi|7692668|gb|AW760769.1|AW760769
genomic: GGGCCAGCATAATTACTGATAACAATGGAGATATGCTGCTAGATACAAAAgtgtgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
EST: GGGCCAGCATAATTACTGATAACAATGGAGATATGCTGCTAGATACAAGA GTTTCATCATCTAATCTGTGTGTGCCAGAGCCAGAGGATGCTEST: gi|193418470|gb|FK385214.1|FK385214
genomic: GGGCCAGCATAATTACTGATAACAATGGAGATATGCTGCTAGATACAAAAgtgtgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCT
EST: GGCCAGCATAATTACTGATAACAATGGAGATATGCTGCTAGATAACAAAA GTTTCATCATCTAATEST: gi|193464477|gb|FK434127.1|FK434127
genomic: GGCCAGCATAATTACTGATAACAATGGAGATATGCTGCTAGATA-CAAAAgtgtgtttga ... aattttgcagGTTTCATCATCTAAT
EST: GGGCCAGCATAATTACTGATAACAACGGAGATATGCTGCTAGATACAAAA GTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCACEST: gi|193455226|gb|FK417789.1|FK417789
genomic: GGGCCAGCATAATTACTGATAACAATGGAGATATGCTGCTAGATACAAAAgtgtgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCAC
EST: GATATGCTGCTAGATACAAAA GTTTCATCATCTAATCTGTTTGT
genomic: GATATGCTGCTAGATACAAAAgtgtgtttga ... aattttgcagGTTTCATCATCTAATCTGTTTGT
acctggttaatgggttgtggcgcggttatttaatgagaaatgtttaattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCACGGAGATGCCAATCTTGCTGTTGATGACTTTTTAGCACGAGCACCTTTAT
ttatttaatgagaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacccgtacaaatctagaattccctagttactagtgtattcttaacctggttaatgggttgtggcgcggttatttaatgagaaatgtttaattttgcagGTTTCATCATCTAATCTGTTTGTGCCAGAGCCAGAGGATGCTGTTGCCCACGGAGATGCCAATCTTGCTGTTGATGACTTTTTAGCACGAGCACCTTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- -cccgtac
- - - - - - - - - - -tccctag
- - - - - - - - - - - - - - - - - -tgtattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttgtg