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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatatcttctgttgtttgggaaacttctcatgggtatggagcatcaactaggaataccatattggttctgcagCTTGGATTCTGTCCAGGGATCAACTTGCACGGGCTTAAAGGATGTTTGTCAGATAGATAGCATACGGTTCTCAACTGTATATCATAAAGCGGATTCCTAC

Basic information

species Glycine max
transcript GLYMA10G39670.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299835|gb|FG990072.1|FG990072
EST:     GACTCTTGCAATAAGATGGCAACCTATGGAATGAACTCTAGAAACTT                         CTTGGATTCTGTCCAGGGATCAACTTGCACGGGCTTAAAGGATGTTTGTCA
genomic: GACTCTTGCAATAAGATGGCAACCTATGGAATGAACTCTAGAAACTTgtaagtatat ... ggttctgcagCTTGGATTCTGTCCAGGGATCAACTTGCACGGGCTTAAAGGATGTTTGTCA
EST: gi|193605106|gb|FK556420.1|FK556420
EST:     GACTCTTGCAATAAGATGGCAACCTATGGAATGAACTCTAGAAACTT                         CTTGGATTCTGTCCAGGGATCAACTTG
genomic: GACTCTTGCAATAAGATGGCAACCTATGGAATGAACTCTAGAAACTTgtaagtatat ... ggttctgcagCTTGGATTCTGTCCAGGGATCAACTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaaacttctcatgggtatggagcatcaactaggaataccatattggttctgcagCTTGGATTCTGTCCAGGGATCAACTTGCACGGGCTTAAAGGATGTTTGTCAGATAGATAGCATACGGTTCTCAACTGTATATCATAAAGCGGATTCCTAC
                                        atatt  TA-rich tract