Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacactgtcgtggtgcttttgtggttttattgattacaaacttagactattccttttttctaaattatagactcttttggtgcagTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCCGAG

Basic information

species Glycine max
transcript GLYMA10G38920.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393515|gb|EV263390.1|EV263390
EST:     TCCATACTGCAAAAGGCGACTCTGAAGGAAACAACCTTGTAGAAGATATG                         TCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATA
genomic: TCCATACTGCAAAAGGCGACTCTGAAGGAAACAACCTTGTAGAAGATATGgtatacactg ... tttggtgcagTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATA
EST: gi|9898564|gb|BE607532.1|BE607532
EST:     TCCATACTGCAAAAGGCGACTCTGAAGGAAACAACCTTGTAGAAGATATG                         TCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATA
genomic: TCCATACTGCAAAAGGCGACTCTGAAGGAAACAACCTTGTAGAAGATATGgtatacactg ... tttggtgcagTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattacaaacttagactattccttttttctaaattatagactcttttggtgcagTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCCGAG
                           ttctaaa  putative branch site (score: 2)
                                         ctctttt  putative PPT
                 tattccttttttctaa  TA-rich tract