1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...agccaaaggagttctactaataagcttatactacatttccaatattgattttgaccaaaattttaaatctaaatctgaaatgaatgaaacatttttgcagCTTACCGTGCCACAAATCAAAGCTGAAATGGAGAAAATATTGCAATGGCTTGTTCCTATTGCCGCCAATACAACAAA
species | Glycine max |
transcript | GLYMA10G36210.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TAAAATCAGCATTGCGCTCGAGGTTACAGTCATTTCAGGTTAAAGAAGAG CTTACCGTGCCACAAATCAAAGCTGAAATGGAGAAAATATTGCAATGGCTTEST: gi|120490977|gb|EH219144.1|EH219144
genomic: TAAAATCAGCATTGCGCTCGAGGTTACAGTCATTTCAGGTTAAAGAAGAGgtgcatattc ... atttttgcagCTTACCGTGCCACAAATCAAAGCTGAAATGGAGAAAATATTGCAATGGCTT
EST: TAAAATCAGCATTGCGCTCGAGGTTACAGTCATTTCAGGTTAAAGAAGAG CTTACCGTGCCACAAATCAAAGCTGAAATGGAGAAAATATTGCAATGGCTTEST: gi|207759243|gb|GD734386.1|GD734386
genomic: TAAAATCAGCATTGCGCTCGAGGTTACAGTCATTTCAGGTTAAAGAAGAGgtgcatattc ... atttttgcagCTTACCGTGCCACAAATCAAAGCTGAAATGGAGAAAATATTGCAATGGCTT
EST: ATTGCGCTCGAGGTTACAGTCATTTCAGGTTAAAGAAGAG CTTACCGTGCCACAAATCAAAGCTGAAATGGAGAAAATATTGCAATGGCTT
genomic: ATTGCGCTCGAGGTTACAGTCATTTCAGGTTAAAGAAGAGgtgcatattc ... atttttgcagCTTACCGTGCCACAAATCAAAGCTGAAATGGAGAAAATATTGCAATGGCTT
tgattttgaccaaaattttaaatctaaatctgaaatgaatgaaacatttttgcagCTTACCGTGCCACAAATCAAAGCTGAAATGGAGAAAATATTGCAATGGCTTGTTCCTATTGCCGCCAATACAACAAA
atctaaa putative branch site (score: 3)
cattttt putative PPT
aaaattttaaatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agccaaaggagttctactaataagcttatactacatttccaatattgattttgaccaaaattttaaatctaaatctgaaatgaatgaaacatttttgcagCTTACCGTGCCACAAATCAAAGCTGAAATGGAGAAAATATTGCAATGGCTTGTTCCTATTGCCGCCAATACAACAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - ctacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - -accaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatga