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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaagatgcaatttaggattgtggtagactaagtaatatttacgtggagcaccaagcagaacatttctggtggctgaaactgctgtttttttctgttgcagATCACTAAACCAACCATACCATTGGACTCGTCAATTGATCAAGGCCCTTATGTTAATGTTAAGGAAGATGGAATGGTGGCTGCATTGAACAATGAGCCAA

Basic information

species Glycine max
transcript GLYMA10G35910.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12774362|gb|BG239289.1|BG239289
EST:     GGTGAATTACGTGCTAGCCATTTTATGCATGTACAGAAGAAG                         ATCACTAAACCAACCATACCATTGGACTCGTCAATTGATCAAGGCCCTTAT
genomic: GGTGAATTACGTGCTAGCCATTTTATGCATGTACAGAAGAAGgtaaacataa ... tctgttgcagATCACTAAACCAACCATACCATTGGACTCGTCAATTGATCAAGGCCCTTAT
EST: gi|9820109|gb|BE555619.1|BE555619
EST:     GTACAGAAGAAG                         ATCACTAAACCAACCATACCATTGGACTCGTCAATTGATCAAGGCCCTTAT
genomic: GTACAGAAGAAGgtaaacataa ... tctgttgcagATCACTAAACCAACCATACCATTGGACTCGTCAATTGATCAAGGCCCTTAT
EST: gi|51337640|gb|CO981506.1|CO981506
EST:     AATTCCTTGGTGAATTACGTGCTAGCCATTTTATGCATGTACAGAAGAAG                         ATCACTAAACCAACCATACCATTGGACTCGTCAATTGATCAAGGCCCTTAT
genomic: AATTCCTTGGTGAATTACGTGCTAGCCATTTTATGCATGTACAGAAGAAGgtaaacataa ... tctgttgcagATCACTAAACCAACCATACCATTGGACTCGTCAATTGATCAAGGCCCTTAT
EST: gi|19053857|gb|BM732524.1|BM732524
EST:     ATTACGTGCTAGCCATTTTATGCATGTACAGAAGAAG                         ATCACTAAACCAACCATACCATTGGACTCGTCAATTGATCAAGGCCCTTAT
genomic: ATTACGTGCTAGCCATTTTATGCATGTACAGAAGAAGgtaaacataa ... tctgttgcagATCACTAAACCAACCATACCATTGGACTCGTCAATTGATCAAGGCCCTTAT
EST: gi|208041533|gb|GD840365.1|GD840365
EST:     AATTCCTTGGTGAATTACGTGCTAGCCATTTTATGCATGTACAGAAGAAG                         ATCACTAAACCAACCATACCATTGGACTCGTCAATTGATCAAGGCCCTTAT
genomic: AATTCCTTGGTGAATTACGTGCTAGCCATTTTATGCATGTACAGAAGAAGgtaaacataa ... tctgttgcagATCACTAAACCAACCATACCATTGGACTCGTCAATTGATCAAGGCCCTTAT
EST: gi|209715898|gb|BW650911.1|BW650911
EST:     AATTCCTTGGTGAATTACGTGCTAGCCATTTTATGCATGTACAGAAGAAG                         ATCACTAAACCAACCATACCATTGGACTCGTCAATTGATCAAGGCCCTTAT
genomic: AATTCCTTGGTGAATTACGTGCTAGCCATTTTATGCATGTACAGAAGAAGgtaaacataa ... tctgttgcagATCACTAAACCAACCATACCATTGGACTCGTCAATTGATCAAGGCCCTTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagcaccaagcagaacatttctggtggctgaaactgctgtttttttctgttgcagATCACTAAACCAACCATACCATTGGACTCGTCAATTGATCAAGGCCCTTATGTTAATGTTAAGGAAGATGGAATGGTGGCTGCATTGAACAATGAGCCAA
                                 ctgctgtttttttct  CT-rich tract
                                     tgttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaagatgcaatttaggattgtggtagactaagtaatatttacgtggagcaccaagcagaacatttctggtggctgaaactgctgtttttttctgttgcagATCACTAAACCAACCATACCATTGGACTCGTCAATTGATCAAGGCCCTTATGTTAATGTTAAGGAAGATGGAATGGTGGCTGCATTGAACAATGAGCCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- -gatgcaa
- - - - - - - -gattgtg
- - - - - - - - - - - - - - - - - - - - - - - - - ccaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctga