1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagtgaacctgttaaggccgggctgctattacttattagtttaaagtttggtcttatattgatgaatgatcaaataacttatctgatcaccagctctaattaaaacaaatagattgaggagaaataattttcttgtcctatttaccagGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAACAGCGATGAGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATT
species | Glycine max |
transcript | GLYMA10G34370.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCT GAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAACEST: gi|207732562|gb|GD708085.1|GD708085
genomic: TAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTgtaagtgaac ... tatttaccagGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
EST: ATGACAAAGAGGGTTTTGTTGGTTTCTCAAGAGGGAATTGCCT GAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAACEST: gi|192333297|gb|FK024274.1|FK024274
genomic: ATGACAAAGAGGG-TTTG-TGGTTTCTCAAGAGGGAATTGCCTgtaagtgaac ... tatttaccagGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
EST: TAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCT GAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAACEST: gi|209709967|gb|BW681010.1|BW681010
genomic: TAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTgtaagtgaac ... tatttaccagGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
EST: CAAGAGGGAATTGCCT GAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAACEST: gi|214005577|gb|DB984585.1|DB984585
genomic: CAAGAGGGAATTGCCTgtaagtgaac ... tatttaccagGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
EST: ATTTTGATGACAAAGAGGGTTTGTGGTTACACAAGAGGGAATTGCCT GAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAACEST: gi|31311023|gb|CD396226.1|CD396226
genomic: ATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTgtaagtgaac ... tatttaccagGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
EST: TAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCT GAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAACEST: gi|151406054|gb|EV275869.1|EV275869
genomic: TAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTgtaagtgaac ... tatttaccagGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
EST: TAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCT GAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAACEST: gi|58018836|gb|CX705578.1|CX705578
genomic: TAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTgtaagtgaac ... tatttaccagGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
EST: TAAATTTTGATGACAATGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCT GAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
genomic: TAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTgtaagtgaac ... tatttaccagGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAAC
ctctaattaaaacaaatagattgaggagaaataattttcttgtcctatttaccagGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAACAGCGATGAGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATT
ctctaat putative branch site (score: 3)
ttttcttgtcctattt putative PPT
attaaaacaaatagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgaacctgttaaggccgggctgctattacttattagtttaaagtttggtcttatattgatgaatgatcaaataacttatctgatcaccagctctaattaaaacaaatagattgaggagaaataattttcttgtcctatttaccagGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAACAGCGATGAGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG