1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgtattacaattttcatatgaaggaacactataatttaataggcagctgctatttttcacaattaaatatgtatttcagGAACTCCAGTCAGTCCAGGCACAACTTGTGGCTGAGAGATCAAGATGCTTTAACTTGGAG
species | Glycine max |
transcript | GLYMA10G34180.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAG GAACTCCAGTCAGTCCAGGCACAACTTGTGGCTGAGAGATCAAGATGCTTTEST: gi|26048846|gb|CA785299.1|CA785299
genomic: TAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAGgtatgtatta ... tgtatttcagGAACTCCAGTCAGTCCAGGCACAACTTGTGGCTGAGAGATCAAGATGCTTT
EST: TTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAG GAACTCCAGTCAGTCCAGGCACAACTTGTGGCTGAGAGATCAAGATGCTTTEST: gi|208136741|gb|GD935039.1|GD935039
genomic: TTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAGgtatgtatta ... tgtatttcagGAACTCCAGTCAGTCCAGGCACAACTTGTGGCTGAGAGATCAAGATGCTTT
EST: TTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAG GAACTCCAGTCAGTCCAGGCACAACTTGTGACTGAGAGATCAAGATGCTTT
genomic: TTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAGgtatgtatta ... tgtatttcagGAACTCCAGTCAGTCCAGGCACAACTTGTGGCTGAGAGATCAAGATGCTTT
aacactataatttaataggcagctgctatttttcacaattaaatatgtatttcagGAACTCCAGTCAGTCCAGGCACAACTTGTGGCTGAGAGATCAAGATGCTTTAACTTGGAG
atttaat putative branch site (score: 4)
tatttttcacaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtattacaattttcatatgaaggaacactataatttaataggcagctgctatttttcacaattaaatatgtatttcagGAACTCCAGTCAGTCCAGGCACAACTTGTGGCTGAGAGATCAAGATGCTTTAACTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG