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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcataaattattaagttttctttgttggacctgtaattattgagatatgcacagctgtcctattgagtatttcttcactatttttgtaaagccaacctacttctgtggtgtgacacaatgtatcttatagATTGTTCCAGGTTACTATTTAAGAAGGAATAGTGATGGTTTAATCGAGCACAGTACTTGTATAAATAATACTGCTAGTGAGCACTTTATGGTTGAGCGTT

Basic information

species Glycine max
transcript GLYMA10G34080.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34080.1 (Glycine max), 3'ss of exon 12
lower sequence: AT5G04360.1 (Arabidopsis thaliana), 3'ss of exon 12
gtcataaattattaagttttctttgttggacctgtaatta-ttgagatatgcacagctgtcctattgagtatttcttcactatttttgtaaagccaacctacttctgtggtgtgacacaatgtatct-tatagATTGTTCCAGGTTACTATTTAAGAAGGAATAGTGATGGTTTAATCGAGCACAGTACTTGTATAAATAATACTGCTAGTGAGCACTTTATGGTTGAGCGTT
                                || |  ||  | |||| ||   |  | ||   ||||  | |   |  |||   |   ||  |  | |||  |         || | ||||||| |   ||||| ||||||||||||||||| |||||||| ||||||||||| || ||  ||||||| ||  |||| || |||||||| ||||||| ||||||||| ||| 
-----------------------------gtgtgcacctaactaagatttgattaattttcagtttgataactaactgtctagcctg--aattctcatctatcttc----cacgaaaaaatgtatttgcttagATAGTTCCAGGTTACTATTTGAGAAGGAACAGTGATGGTTTTATTGAAAACAGTACATGCGTAAACAACACTGCTAGCGAGCACTATATGGTTGATCGTC

upper sequence: GLYMA10G34080.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv13s0019g05160.t01 (Vitis vinifera), 3'ss of exon 12
gtcataaattattaagttttctttgttggacctgtaattattgagat--atgcacagctgtcctattgagtatttcttcactatttttgtaaagccaacctacttctgtggtgtgacacaatgtatcttatagATTGTTCCAGGTTACTATTTAAGAAGGAATAGTGATGGTTTAATCGAGCACAGTACTTGTATAAATAATACTGCTAGTGAGCACTTTATGGTTGAGCGTT
                               |   ||||          ||  |  |||||||| |  |  |||| | |  | |  ||   |      ||| || || |  ||  | | | | |  | | ||||||||||||||||||||||| ||||| || |||||||| |  || ||||| ||| | ||| |||||||||| || |||||||| ||||||||||| ||| 
-----------------------------gtcaaaaattgccacctctaatagaaggctgtcctgtcaa--atttatcctttttcgttaagagttttgcct-ctccttttctgaca-atacttttccctgtagATTGTTCCAGGTTACTATTTGAGAAGAAACAGTGATGGCTGCATTGAGCATAGTGCATGTGTAAATAATACAGCCAGTGAGCATTTTATGGTTGAACGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactatttttgtaaagccaacctacttctgtggtgtgacacaatgtatcttatagATTGTTCCAGGTTACTATTTAAGAAGGAATAGTGATGGTTTAATCGAGCACAGTACTTGTATAAATAATACTGCTAGTGAGCACTTTATGGTTGAGCGTT
     tttttgtaaa  TA-rich tract