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...taaaatcaactaatgatgggggcagttgttacttctctattcaaatcttgaattttgttgttttatttttattataaaacttgtttgtttactttcatagATCCAACATACATGATTCGGGCTATTCCAAGTAATGCCTCGGACAACATTTACTGCACTCTTCTTGCACATGGTGCTGTTCATGGAGCTATGGCTGGATA
species | Glycine max |
transcript | GLYMA10G33820.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GATCATTTCTCAATGTCTCGAAAGATGGCAGTGAATATGAAATATATAG ATCCAACATACATGATTCGGGCTATTCCAAGTAATGCCTCGGACAACATTTEST: gi|213590983|gb|DB975155.1|DB975155
genomic: GATCATTTCTCAATGTCTCGAAAGATGGCAGTGAATATGAAATATATAGgtattttcat ... actttcatagATCCAACATACATGATTCGGGCTATTCCAAGTAATGCCTCGGACAACATTT
EST: AATATGAAATATATAG ATCCAACATACATGATTCGCGCATA-TCCAAGTAATGCCTCGGACAACATTEST: gi|14991854|gb|BI317527.1|BI317527
genomic: AATATGAAATATATAGgtattttcat ... actttcatagATCCAACATACATGATTCGGGC-TATTCCAAGTAATGCCTCGGACAACATT
EST: GATCATTTCTCAATGTCTCGAAAGATGGCAGTGAATATGAAATATATAG ATCCAACATACATGATTCGGGCTATTCCAAGTAATGCCTCGGACAACATTT
genomic: GATCATTTCTCAATGTCTCGAAAGATGGCAGTGAATATGAAATATATAGgtattttcat ... actttcatagATCCAACATACATGATTCGGGCTATTCCAAGTAATGCCTCGGACAACATTT
tcttgaattttgttgttttatttttattataaaacttgtttgtttactttcatagATCCAACATACATGATTCGGGCTATTCCAAGTAATGCCTCGGACAACATTTACTGCACTCTTCTTGCACATGGTGCTGTTCATGGAGCTATGGCTGGATA
tttactttc CT-rich tract
aattttgttgttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaatcaactaatgatgggggcagttgttacttctctattcaaatcttgaattttgttgttttatttttattataaaacttgtttgtttactttcatagATCCAACATACATGATTCGGGCTATTCCAAGTAATGCCTCGGACAACATTTACTGCACTCTTCTTGCACATGGTGCTGTTCATGGAGCTATGGCTGGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - gatgggg
- - - - - - - - - - -gcagttg
- - - - - - - - - - - - - - - - - - ctattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt