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...atgggataattacttttattaatagttatagataacataacaaaacttggcatatcatgcatttggttttaggcctaaatggatatcatcataactgcagATGAATCAAAGGCTATGGATTCCAGTCACTGAATATGCAAGCAGTATAATATTTGATGAGGCCATGTTGCGGTAAATGTCTACTAATAGTGTGCTCTAGA
species | Glycine max |
transcript | GLYMA10G32500.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGAGATGTCTGGGAAGAATCACTTGAGGCCCCTTTCTGAGGTTAATTAAG ATGAATCAAAGGCTATGGATTCCAGTCACTGAATATGCAAGCAGTATAATAEST: gi|13312765|gb|BG406416.1|BG406416
genomic: GGAGATGTCTGGGAAGAATCACTTGAGGCCCCTTTCTGAGGTTAATTAAGgtaggttcag ... ataactgcagATGAATCAAAGGCTATGGATTCCAGTCACTGAATATGCAAGCAGTATAATA
EST: GGAGATGTCTGGGAAGAATCACTTGAGGCCCCTTTCTGAGGTTAATTAAG ATGAATCAAAGGCTATGGATTCCAGTCACTGAATATGCAAGCAGTATAATAEST: gi|21256450|gb|BQ453338.1|BQ453338
genomic: GGAGATGTCTGGGAAGAATCACTTGAGGCCCCTTTCTGAGGTTAATTAAGgtaggttcag ... ataactgcagATGAATCAAAGGCTATGGATTCCAGTCACTGAATATGCAAGCAGTATAATA
EST: GGAGATGTCTGGGAAGAATCACTTGAGGCCCCTTTCTGAGGTTAATTAAG ATGAATCAAAGGCTATGGATTCCAGTCACTGAATATGCAAGCAGTATAATA
genomic: GGAGATGTCTGGGAAGAATCACTTGAGGCCCCTTTCTGAGGTTAATTAAGgtaggttcag ... ataactgcagATGAATCAAAGGCTATGGATTCCAGTCACTGAATATGCAAGCAGTATAATA
cttggcatatcatgcatttggttttaggcctaaatggatatcatcataactgcagATGAATCAAAGGCTATGGATTCCAGTCACTGAATATGCAAGCAGTATAATATTTGATGAGGCCATGTTGCGGTAAATGTCTACTAATAGTGTGCTCTAGA
tcataac putative branch site (score: 2)
atatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgggataattacttttattaatagttatagataacataacaaaacttggcatatcatgcatttggttttaggcctaaatggatatcatcataactgcagATGAATCAAAGGCTATGGATTCCAGTCACTGAATATGCAAGCAGTATAATATTTGATGAGGCCATGTTGCGGTAAATGTCTACTAATAGTGTGCTCTAGA
- - - - - - - - - - - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcctaaa