Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccatcaaaatcaaagcagtgcaccttttttacttttccatttggccctgcaccccctgctgaatatgctgaataattttcatattctgcttacttatcttctattgactattgagcctggaataagctttattctttgttttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT

Basic information

species Glycine max
transcript GLYMA10G31310.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193661647|gb|FK602601.1|FK602601
EST:     AAAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
genomic: AAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
EST: gi|193488290|gb|FK456113.1|FK456113
EST:     ATGCTCCAAATGTCATGAGTTTGATAAGAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGATTTCTACGACA
genomic: ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACA
EST: gi|14011604|gb|BG726526.1|BG726526
EST:     ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
genomic: ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
EST: gi|23731912|gb|BU764103.1|BU764103
EST:     ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAATGAT
genomic: ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAATGAT
EST: gi|10231661|gb|BE800549.1|BE800549
EST:     ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
genomic: ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
EST: gi|22928753|gb|BU545892.1|BU545892
EST:     ATAAAAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGANNNNNNNGACATGCTTTCAAAT
genomic: ATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
EST: gi|208081318|gb|GD881650.1|GD881650
EST:     ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
genomic: ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
EST: gi|7690977|gb|AW759112.1|AW759112
EST:     ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
genomic: ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
EST: gi|31471412|gb|CD413440.1|CD413440
EST:     ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAG                         GTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
genomic: ATGCTCCAAATGTCATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAGgtaccatcaa ... tttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcttctattgactattgagcctggaataagctttattctttgttttccttcagGTTCGAGTTATGAAGGATTTCTACGACATGCTTTCAAAT
       tattgac  putative branch site (score: 2)
                                ctttattctttgtttt  putative PPT
                                 tttattctttgtttt  TA-rich tract