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gtaagtgtttttgaaacaagacttttttctgagcctgctacatgcttagaagtttgatttattttactcaaaaatgaattaaggaagttgagatctctgttcactgcagtgtctattccctgctttcttcatttttaaaaattaaaacttctaaacttgtcttattttgggcattatatattagTACAGGGATGAAATGAAATTAATGTCCCATAACTGATGGACTGGCCATTACTCAGAGACACTGGGCTCAGGATCAGCTTTTAAGTGGGGTTGTGCCAACT
species | Glycine max |
transcript | GLYMA10G30930.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCAGAAGTCTGGGATGAATCACTAGAGGCTCCCTTCTAAAGATATTTTTG ----GG-ATGAAATGAAATTAATGTCCCATAACTGATGGACTGGCCATTACEST: gi|58019797|gb|CX706539.1|CX706539
genomic: GCAGAAGTCTGGGATGAATCACTAGAGGCTCCCTTCTAAAGATATTTTTGgtaagtgttt ... tatatattagTACAGGGATGAAATGAAATTAATGTCCCATAACTGATGGACTGGCCATTAC
EST: GCAGAAGTCTGGGATGAATCACTAGAGGCTCCCTTCTAAAGATATTTTTG ----GG-ATGAAATGAAATTAATGTCCCATAACTGATGGACTGGCCATTACEST: gi|10231459|gb|BE800347.1|BE800347
genomic: GCAGAAGTCTGGGATGAATCACTAGAGGCTCCCTTCTAAAGATATTTTTGgtaagtgttt ... tatatattagTACAGGGATGAAATGAAATTAATGTCCCATAACTGATGGACTGGCCATTAC
EST: GCAGAAGTCTGGGATGAATCACTAGAGGCTCCCTTCTAAAGATA-TTTT- T---GGGATGAAATGAAATTAATGTCCCATAACTGATGGACTGGCCATTAC
genomic: GCAGAAGTCTGGGATGAATCACTAGAGGCTCCCTTCTAAAGATATTTTTGgtaagtgttt ... tatatattagTACAGGGATGAAATGAAATTAATGTCCCATAACTGATGGACTGGCCATTAC
catttttaaaaattaaaacttctaaacttgtcttattttgggcattatatattagTACAGGGATGAAATGAAATTAATGTCCCATAACTGATGGACTGGCCATTACTCAGAGACACTGGGCTCAGGATCAGCTTTTAAGTGGGGTTGTGCCAACT
ttctaaa putative branch site (score: 2)
ttaaaaattaaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtttttgaaacaagacttttttctgagcctgctacatgcttagaagtttgatttattttactcaaaaatgaattaaggaagttgagatctctgttcactgcagtgtctattccctgctttcttcatttttaaaaattaaaacttctaaacttgtcttattttgggcattatatattagTACAGGGATGAAATGAAATTAATGTCCCATAACTGATGGACTGGCCATTACTCAGAGACACTGGGCTCAGGATCAGCTTTTAAGTGGGGTTGTGCCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT