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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgccggtattgcatttggtatgagaactgtaactatgatctaagttcattccctttctaattcatttgtgcacaactgtgcttttattttagGTTGAAAACCCACTTCGAAACTAATCCAAAAGACCTAG

Basic information

species Glycine max
transcript GLYMA10G29360.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15662639|gb|BI700010.1|BI700010
EST:     CGAGAGTCACGAGCCCAGGATCTGAGGAATGAAATTTTGAACTCTGAAAA                         GTTGAAAACCCACTTCGAAACTAATCCAAAAGACCTAG
genomic: CGAGAGTCACGAGCCCAGGATCTGAGGAATGAAATTTTGAACTCTGAAAAgtgagtgccg ... tttattttagGTTGAAAACCCACTTCGAAACTAATCCAAAAGACCTAG
EST: gi|58022646|gb|CX709387.1|CX709387
EST:     CGAGAGTCACGAGCCCAGGATCTGAGGAATGAAATTTTGAACTCTGAAAA                         GTTGAAAACCCACTTCGAAACTAATCCAAAAGACCTAG
genomic: CGAGAGTCACGAGCCCAGGATCTGAGGAATGAAATTTTGAACTCTGAAAAgtgagtgccg ... tttattttagGTTGAAAACCCACTTCGAAACTAATCCAAAAGACCTAG
EST: gi|16343693|gb|BI969288.1|BI969288
EST:     CGAGAGTCACGAGCCCAGGATCTGAGGAATGAAATTTTGAACTCTGAAAA                         GTTGAAAACCCACTTCGAAACTAATCCAAAAGACCTAG
genomic: CGAGAGTCACGAGCCCAGGATCTGAGGAATGAAATTTTGAACTCTGAAAAgtgagtgccg ... tttattttagGTTGAAAACCCACTTCGAAACTAATCCAAAAGACCTAG
EST: gi|58019626|gb|CX706368.1|CX706368
EST:     CGAGAGTCACGAGCCCAGGATCTGAGGAATGAAATTTTGAACTCTGAAAA                         GTTGAAAACCCACTTCGAAACTAATCCAAAAGACCTAG
genomic: CGAGAGTCACGAGCCCAGGATCTGAGGAATGAAATTTTGAACTCTGAAAAgtgagtgccg ... tttattttagGTTGAAAACCCACTTCGAAACTAATCCAAAAGACCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctaagttcattccctttctaattcatttgtgcacaactgtgcttttattttagGTTGAAAACCCACTTCGAAACTAATCCAAAAGACCTAG
                 ttctaat  putative branch site (score: 2)
                                           cttttatttt  putative PPT
                tttctaattcattt  TA-rich tract