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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaaactattgattcctgaaatttttggtccatcatcagttacactgattctgacgaagttaatgttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT

Basic information

species Glycine max
transcript GLYMA10G28890.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208332454|gb|GE127781.1|GE127781
EST:     GAATCAGAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|207690344|gb|GD672961.1|GD672961
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAG-AAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|48575646|gb|CO036506.1|CO036506
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGGGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|9901583|gb|BE610551.1|BE610551
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|193602836|gb|FK555389.1|FK555389
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|208178857|gb|GD979636.1|GD979636
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|193446310|gb|FK415767.1|FK415767
EST:     GGAGGAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GGAGGAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|208175517|gb|GD973356.1|GD973356
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGAACTACCGATG
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGA-CT-CCGATG
EST: gi|6718529|gb|AW306176.1|AW306176
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|7147106|gb|AW509028.1|AW509028
EST:     GAATCANAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGA
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGA
EST: gi|193552246|gb|FK508961.1|FK508961
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|193303310|gb|FK272532.1|FK272532
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGGGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATG
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATG
EST: gi|208061061|gb|GD859167.1|GD859167
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGAT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGAT
EST: gi|193653163|gb|FK599049.1|FK599049
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGG
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGG
EST: gi|17518857|gb|BM187899.1|BM187899
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|193513587|gb|FK469161.1|FK469161
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|13789722|gb|BG652313.1|BG652313
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|207833635|gb|GD807594.1|GD807594
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|207700520|gb|GD683627.1|GD683627
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|193722198|gb|FK660808.1|FK660808
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGNGGAA
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAA
EST: gi|208182798|gb|GD986928.1|GD986928
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|12689947|gb|BG156283.1|BG156283
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|21677154|gb|BQ629505.1|BQ629505
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAAGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|5126832|gb|AI748568.1|AI748568
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|208179905|gb|GD979298.1|GD979298
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|7029401|gb|AW459184.1|AW459184
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|208053811|gb|GD853094.1|GD853094
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCG
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCG
EST: gi|208301126|gb|GE097363.1|GE097363
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|208314951|gb|GE115715.1|GE115715
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|193455652|gb|FK420455.1|FK420455
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|208062621|gb|GD860726.1|GD860726
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|193632834|gb|FK583370.1|FK583370
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|208227765|gb|GE026811.1|GE026811
EST:     ATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGAC
genomic: ATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGAC
EST: gi|193311642|gb|FK275538.1|FK275538
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|193731110|gb|FK664348.1|FK664348
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|208143744|gb|GD943419.1|GD943419
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAACGACTCCGATG
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATG
EST: gi|208116726|gb|GD915428.1|GD915428
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|208313796|gb|GE114238.1|GE114238
EST:     AAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: AAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|151411454|gb|EV281265.1|EV281265
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|208127510|gb|GD921700.1|GD921700
EST:     GGAGGAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GGAGGAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|207748503|gb|GD719010.1|GD719010
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGAAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|207776362|gb|GD750355.1|GD750355
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|207717257|gb|GD697234.1|GD697234
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|208077024|gb|GD876009.1|GD876009
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGGAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|19053178|gb|BM731845.1|BM731845
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|208050685|gb|GD844200.1|GD844200
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|208314836|gb|GE115684.1|GE115684
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|4290764|gb|AI441665.1|AI441665
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|193523662|gb|FK479965.1|FK479965
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|208125420|gb|GD921080.1|GD921080
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCG
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCG
EST: gi|193529726|gb|FK483993.1|FK483993
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|7234592|gb|AW569928.1|AW569928
EST:     GAATCAAAGGATGACCCATTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|7146167|gb|AW508152.1|AW508152
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATTGA-GCTGGCAATGACTCCGATGC
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGAT-GAAGCTGGCAATGACTCCGATGC
EST: gi|208192254|gb|GD990200.1|GD990200
EST:     GGAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GGAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|193420306|gb|FK392164.1|FK392164
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGA-GCTGGCAAT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAAT
EST: gi|207779936|gb|GD753957.1|GD753957
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCG
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCG
EST: gi|208236911|gb|GE029781.1|GE029781
EST:     AGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: AGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|7234631|gb|AW569967.1|AW569967
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAA
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAA
EST: gi|208142791|gb|GD942341.1|GD942341
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGA
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGA
EST: gi|12772505|gb|BG237432.1|BG237432
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
EST: gi|193542794|gb|FK500125.1|FK500125
EST:     GAATCAAAGGATGACCCAGTTGACTCTGAT                         GCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT
genomic: GAATCAAAGGATGACCCAGTTGACTCTGATgtaagaaaaa ... ttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttggtccatcatcagttacactgattctgacgaagttaatgttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT
                                           tgttctct  CT-rich tract
                                    aagttaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagaaaaactattgattcctgaaatttttggtccatcatcagttacactgattctgacgaagttaatgttctctatagGCTGATGAGGAAGAGGAAGATGCTGATGAAGCTGGCAATGACTCCGATGCTGAATCAAAGACGGAAGCTGGAGAAGACACCAAGGAAGAGGGTGTACAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG