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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaacactttgttagctcttgttactaaattctataaagaaatacaatattctaaagaattatgcattctcaatcttacttgcttcagGTGCATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGATTCAATTTCTTCAGGGCCTGTTGATGCTCGTGTCAGTGCAAACTCAACA

Basic information

species Glycine max
transcript GLYMA10G11720.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G11720.2 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G033592_T01 (Zea mays), 3'ss of exon 12
-------------------------------------------gtaattaacactttgttagctc--ttgttactaaattctataaaga-aatacaatattctaaagaattatgcattctcaatcttacttgcttcagGTGCATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGATTCAATTTCTTCAGGGCCTGTTGATGCTCGTGTCAGTGCAAACTCAACA
                                              |  |  | |||  ||      ||||||||  |   ||| || | ||| |   ||| | ||  || ||  | |   |   || ||   |  ||||||||| |||| ||||||||||| || ||||||||||||||||  || ||||||||||| || || ||  ||||||| |||   |||   || ||||||
gtatgtcatcttttaacaaccgctccctaccatcctgtaattccagaccattatttttgtattctcattgttactttaaaatatgaatataattcctgattttcaaccat-atttactgatagatttgctcaatctagGTGCATGTTACACAACTTTGGTGGGAACATTGAAATGTATGGCATACTTGATTCAATTTCATCTGGCCCCATTGATGCCCGTACAAGTTACAATTCAACA

upper sequence: GLYMA10G11720.2 (Glycine max), 3'ss of exon 12
lower sequence: AT5G13690.1 (Arabidopsis thaliana), 3'ss of exon 12
gtaattaacactttgttagctcttgttactaaattctataaagaaatacaatattctaaagaattatgcattctcaatcttacttgcttcagGTGCATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGATTCAATTTCTTCAGGGCCTGTTGATGCTCGTGTCAGTGCAAACTCAACA
         |  |||||  |||  ||| |    || |              |||| | | |  || |  ||| | ||||  |     | |||||||||||| || || ||||| ||||| ||||||||||||||  |||| ||||||||||||||||| || |||||||||||||| ||   ||| ||||| 
-------gtatattgttgtctca-gtttccttcttatgcctgagtcagttgtatttttacgtgtt-tttattat-aatcggatgaattccagGTGCATGCTTCACAATTTTGGAGGCAACATTGAAATGTATGGTGCTCTTGATTCAATTTCTTCAGGACCAGTTGATGCTCGTGTTAGCAAAAATTCAACC

upper sequence: GLYMA10G11720.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv13s0064g00370.t01 (Vitis vinifera), 3'ss of exon 12
------------------------------------------------------------------gtaattaacactttgt-tagctcttgttactaaattctataaagaaatacaa---tattctaaagaattatgcattc----tcaatcttacttgct--tcagGTGCATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGATTCAATTTCTTCAGGGCCTGTTGATGCTCGTGTCAGTGCAAACTCAACA
                                                                  | ||||  | |||  | | ||  |  |||     || | |     | |       |||    || || ||||| | |    ||||| ||  || |   ||||||| ||| | |||||||||||||| |||||||||||||||||||   | ||| || ||||||| || || |||||||||||  |||||  ||| ||||| 
gtaaccagctctttcaaagaagtagctactatttcataccttgagatagagttttcatgttcaagagaaattttctcttaatcttgcattatttatcttcttttcttttttagtctgggtttatctgtaacaaatatgcttaccatgtcaatttttgttacaaatcagGTGTATGTTGCATAACTTTGGTGGAAATATTGAAATGTATGGCATATTAGATGCAGTTTCTTCTGGTCCAGTTGATGCTCGCATCAGTAAAAATTCAACC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322077|gb|FK012181.1|FK012181
EST:     AAACCAATATGGAAAAATTCCTTTCAGTTTTATGGTACTCCTTATATCTG                         GTGCATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGA
genomic: AAACCAATATGGAAAAATTCCTTTCAGTTTTATGGTACTCCTTATATCTGgtaattaaca ... cttgcttcagGTGCATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaagaaatacaatattctaaagaattatgcattctcaatcttacttgcttcagGTGCATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGATTCAATTTCTTCAGGGCCTGTTGATGCTCGTGTCAGTGCAAACTCAACA
                                        tcttactt  CT-rich tract
      aaatacaatattctaa  TA-rich tract