Sequence
atgc intronic sequence ATGC exonic sequencegtaattaacactttgttagctcttgttactaaattctataaagaaatacaatattctaaagaattatgcattctcaatcttacttgcttcagGTGCATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGATTCAATTTCTTCAGGGCCTGTTGATGCTCGTGTCAGTGCAAACTCAACA
Basic information
species | Glycine max |
transcript | GLYMA10G11720.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G11720.2 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G033592_T01 (Zea mays), 3'ss of exon 12
-------------------------------------------gtaattaacactttgttagctc--ttgttactaaattctataaaga-aatacaatattctaaagaattatgcattctcaatcttacttgcttcagGTGCATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGATTCAATTTCTTCAGGGCCTGTTGATGCTCGTGTCAGTGCAAACTCAACA
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gtatgtcatcttttaacaaccgctccctaccatcctgtaattccagaccattatttttgtattctcattgttactttaaaatatgaatataattcctgattttcaaccat-atttactgatagatttgctcaatctagGTGCATGTTACACAACTTTGGTGGGAACATTGAAATGTATGGCATACTTGATTCAATTTCATCTGGCCCCATTGATGCCCGTACAAGTTACAATTCAACA
upper sequence: GLYMA10G11720.2 (Glycine max), 3'ss of exon 12
lower sequence: AT5G13690.1 (Arabidopsis thaliana), 3'ss of exon 12
gtaattaacactttgttagctcttgttactaaattctataaagaaatacaatattctaaagaattatgcattctcaatcttacttgcttcagGTGCATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGATTCAATTTCTTCAGGGCCTGTTGATGCTCGTGTCAGTGCAAACTCAACA
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-------gtatattgttgtctca-gtttccttcttatgcctgagtcagttgtatttttacgtgtt-tttattat-aatcggatgaattccagGTGCATGCTTCACAATTTTGGAGGCAACATTGAAATGTATGGTGCTCTTGATTCAATTTCTTCAGGACCAGTTGATGCTCGTGTTAGCAAAAATTCAACC
upper sequence: GLYMA10G11720.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv13s0064g00370.t01 (Vitis vinifera), 3'ss of exon 12
------------------------------------------------------------------gtaattaacactttgt-tagctcttgttactaaattctataaagaaatacaa---tattctaaagaattatgcattc----tcaatcttacttgct--tcagGTGCATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGATTCAATTTCTTCAGGGCCTGTTGATGCTCGTGTCAGTGCAAACTCAACA
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gtaaccagctctttcaaagaagtagctactatttcataccttgagatagagttttcatgttcaagagaaattttctcttaatcttgcattatttatcttcttttcttttttagtctgggtttatctgtaacaaatatgcttaccatgtcaatttttgttacaaatcagGTGTATGTTGCATAACTTTGGTGGAAATATTGAAATGTATGGCATATTAGATGCAGTTTCTTCTGGTCCAGTTGATGCTCGCATCAGTAAAAATTCAACCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192322077|gb|FK012181.1|FK012181EST: AAACCAATATGGAAAAATTCCTTTCAGTTTTATGGTACTCCTTATATCTG GTGCATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGA
genomic: AAACCAATATGGAAAAATTCCTTTCAGTTTTATGGTACTCCTTATATCTGgtaattaaca ... cttgcttcagGTGCATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataaagaaatacaatattctaaagaattatgcattctcaatcttacttgcttcagGTGCATGCTACATAACTTTGGTGGCAATATTGAAATGTATGGCACTCTGGATTCAATTTCTTCAGGGCCTGTTGATGCTCGTGTCAGTGCAAACTCAACA
tcttactt CT-rich tract
aaatacaatattctaa TA-rich tract