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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtgccagttctttactggtccaaaatatgcctctattcctgaagaagtatatctaacacccttctctgctttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGATATAGAGAAGGCAATGGTTGGGAACTATGAAGTTTTGAAAAATAAATTTG

Basic information

species Glycine max
transcript GLYMA10G02400.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298185792|gb|HO028103.1|HO028103
EST:     GATATCTTTGAG                         GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
genomic: GATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
EST: gi|193309119|gb|FK273939.1|FK273939
EST:     CGGACAAAGTTGCAATCAGTGATATCTTTGAG                         GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
genomic: CGGACAAAGTTGCAATCAGTGATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
EST: gi|193393876|gb|FK358483.1|FK358483
EST:     CGGACAAAGTTGCAATCAGTGATATCTTTGAG                         GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
genomic: CGGACAAAGTTGCAATCAGTGATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
EST: gi|18848608|gb|BM567759.1|BM567759
EST:     GTTCTGGAGGGGATGACGCGGACAAAGTTGCAATCAGTGATATCTTTGAG                         GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
genomic: GTTCTGGAGGGGATGACGCGGACAAAGTTGCAATCAGTGATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
EST: gi|193395088|gb|FK358589.1|FK358589
EST:     CGGACAAAGTTGCAATCAGTGATATCTTTGAG                         GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
genomic: CGGACAAAGTTGCAATCAGTGATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
EST: gi|193387888|gb|FK354733.1|FK354733
EST:     TCAGTGATATCTTTGAG                         GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
genomic: TCAGTGATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
EST: gi|193393660|gb|FK360674.1|FK360674
EST:     CGGACAAAGTTGCAATCAGTGATATCTTTGAG                         GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
genomic: CGGACAAAGTTGCAATCAGTGATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
EST: gi|193316342|gb|FK281498.1|FK281498
EST:     CGGACAAAGTTGCAATCAGTGATATCTTTGAG                         GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
genomic: CGGACAAAGTTGCAATCAGTGATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
EST: gi|193407493|gb|FK371497.1|FK371497
EST:     CGGACAAAGTTGCAATCAGTGATATCTTTGAG                         GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
genomic: CGGACAAAGTTGCAATCAGTGATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
EST: gi|193388067|gb|FK354268.1|FK354268
EST:     CGGACAAAGTTGCAATCAGTGATATCTTTGAG                         GTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT
genomic: CGGACAAAGTTGCAATCAGTGATATCTTTGAGgttgtgccag ... ttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgcctctattcctgaagaagtatatctaacacccttctctgctttgtgcatagGTTACCTCCAATCAGAGTAAAAGTGGTCCACTGGTGTTGTTCATTAAAGATATAGAGAAGGCAATGGTTGGGAACTATGAAGTTTTGAAAAATAAATTTG
                         atctaac  putative branch site (score: 2)
                               cacccttctctgcttt  CT-rich tract
                      tatatctaa  TA-rich tract