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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgataagggttttgcgcttgtgtgattctattgattacagacttctgactattcctttttctaaatgtatattcttttgatacagTCAGCAGAGTTGCAGATATATACTGACTTCTTGAGGCTTGTACTAGAAATTATAAATGCAATTCTGACTTATGTACTGCCTCAAAATCCTGAG

Basic information

species Glycine max
transcript GLYMA10G00550.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G00550.1 (Glycine max), 3'ss of exon 12
lower sequence: AT1G04200.1 (Arabidopsis thaliana), 3'ss of exon 12
--------------gtttgtg-ataagggttttgcgcttgtgtgattctattgattacagacttctgactattcctttttctaaatgtatattcttttgatacagTCAGCAGAGTTGCAGATATATACTGACTTCTTGAGGCTTGTACTAGAAATTATAAATGCAATTCTGACTTATGTACTGCCTCAAAATCCTGAG
              |||   | | |||  | || |   ||   | | |||||  ||   || |||||    | |  |||| || |||||| ||       | ||| |||||||||||||||| | |||||| ||| |||| ||||| ||||| ||  ||||||||||| |||| || | | ||||   ||||||||||
gtatgacatagttagttcaagcacaagaatatttcatgtgatcgttgctattcctt---gatttctgg---tacacttttttacatgtatcttggca-actgcagGCAGCAGAGTTGCAGATCTTTACTGATTTCCTGAGACTTGTCCTAGATATATTAAATGCAATTTTGACGTACGCATTGCCGAGAAATCCTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgattacagacttctgactattcctttttctaaatgtatattcttttgatacagTCAGCAGAGTTGCAGATATATACTGACTTCTTGAGGCTTGTACTAGAAATTATAAATGCAATTCTGACTTATGTACTGCCTCAAAATCCTGAG
                                       tattctttt  CT-rich tract
                         tttttctaaatgtata  TA-rich tract