1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...attaaaacattttacattatccggctatagaaaattaaactaatttcttattcattgtagtatactactgtttattaatatttatctcaaacattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
species | Glycine max |
transcript | GLYMA09G40990.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAG ATCCACTTGGTGTACAAGGTAAAAGGGTTAGGATGGAAGGTGATGAAGAGEST: gi|208312867|gb|GE111699.1|GE111699
genomic: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
EST: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAG ATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTEST: gi|193707287|gb|FK644101.1|FK644101
genomic: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGT
EST: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAG ATCCACTTGGTGTACAAGGTAAAAGGGTTAGGATGGAAGGTGATGAAGAGEST: gi|193362616|gb|FK327036.1|FK327036
genomic: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
EST: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAG ATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAGEST: gi|193310893|gb|FK277617.1|FK277617
genomic: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
EST: AAGTTATTGCAGTTAACCAAG ATCCACTTGGTGTACAAGGT-AAAAGGTTAGGATGGAAGGTGATGAAGAGEST: gi|207816115|gb|GD789182.1|GD789182
genomic: AAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
EST: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAG ATCCACTTGGTGTACAAGGT-AAAAGGTTAGGATGGAAGGTGGTGAAGGGGEST: gi|193707345|gb|FK644159.1|FK644159
genomic: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAA-GAG
EST: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAG ATCCACTTGGTGTACAAGGTAAAAGGGTTAGGATGGAAGGTGATGAAGAGEST: gi|31458286|gb|CD400314.1|CD400314
genomic: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
EST: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAG ATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAGEST: gi|213600126|gb|DB976043.1|DB976043
genomic: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
EST: AGATAGTAGCTAACAAGGAAGTTGGTGCAGTTAACCAAG ATCCACTTGGCT-AACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAGEST: gi|208328230|gb|GE130060.1|GE130060
genomic: AGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGG-TGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
EST: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAG ATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAGEST: gi|193303351|gb|FK272573.1|FK272573
genomic: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
EST: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAG ATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGA
genomic: AGAGACCATGGAGATAGTAGCTAACAAGGAAGTTATTGCAGTTAACCAAGgtgatacata ... acattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGA
tcttattcattgtagtatactactgtttattaatatttatctcaaacattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
tattaat putative branch site (score: 2)
tagtatactactgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaaaacattttacattatccggctatagaaaattaaactaatttcttattcattgtagtatactactgtttattaatatttatctcaaacattgtcagATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- -aaaacatt
- - - - - - - - - - - - - - - -aaattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actactg