1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gaaatcccataattacttcagccgtaaaataaagcgaaatccttatttttttttattggtgtgtgtacctaacctgccatgtattttttttttttgccagGCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAATGTCTAGTTTAGGTGGGTGTTGAACCTCATGTTGGACAAATAATTTTGC
species | Glycine max |
transcript | GLYMA09G38430.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGGTCACGCTCTAGATCCCAAGAGCGATCTAGAGATTATGATCGACATAG GCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAAEST: gi|214009640|gb|DB987924.1|DB987924
genomic: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAGgtacagaatt ... tttttgccagGCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
EST: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAG GCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAAEST: gi|151403376|gb|EV273186.1|EV273186
genomic: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAGgtacagaatt ... tttttgccagGCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
EST: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAG GCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAAEST: gi|21601672|gb|BQ612003.1|BQ612003
genomic: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAGgtacagaatt ... tttttgccagGCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
EST: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAG GCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAAEST: gi|41146117|gb|CK606328.1|CK606328
genomic: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAGgtacagaatt ... tttttgccagGCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
EST: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAG GCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAAEST: gi|254336539|gb|GR842718.1|GR842718
genomic: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAGgtacagaatt ... tttttgccagGCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
EST: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAG GCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAAEST: gi|193542476|gb|FK499668.1|FK499668
genomic: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAGgtacagaatt ... tttttgccagGCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
EST: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAG GCGTCATGATCGATAEST: gi|16343424|gb|BI969019.1|BI969019
genomic: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAGgtacagaatt ... tttttgccagGCGTCATGATCGATA
EST: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAG GCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
genomic: AGGTCACGCTCTAGATCCCGAGAGCGATCTAGAGATTATGATCGACATAGgtacagaatt ... tttttgccagGCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAA
tttttttttattggtgtgtgtacctaacctgccatgtattttttttttttgccagGCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAATGTCTAGTTTAGGTGGGTGTTGAACCTCATGTTGGACAAATAATTTTGC
acctaac putative branch site (score: 2)
tattttttttttttgc putative PPT
atgtattttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaatcccataattacttcagccgtaaaataaagcgaaatccttatttttttttattggtgtgtgtacctaacctgccatgtattttttttttttgccagGCGTCATGATCGATACTAGCAATTGCCATGAATCTTATGGGTATGAGAAAATGTCTAGTTTAGGTGGGTGTTGAACCTCATGTTGGACAAATAATTTTGC
- - - - - - - -cttcagc
- - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acctgcc