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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctattcatgaagtgcaacattgtctcatggtctttctttattatgcctaacctaatccgttacacttggaacaatgctgatcactttttgatgttatagATCTGAGGAGGAAAGAGAAACATGGGGCTTTTTGAAGGTTATGTTTGAAGATGATGGGACTGCACGCACAAAACTTCTCTCACATCTTGGTTTCAATGTA

Basic information

species Glycine max
transcript GLYMA09G36050.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G36050.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G152963_T01 (Zea mays), 3'ss of exon 12
gtgagttctattcatgaagtgcaacattgtctcatggtctttctttattatgcctaacctaatccgttacacttggaacaatgctgatcactttttgatgttatagATCTGAGGAGGAAAGAGAAACATGGGGCTTTTTGAAGGTTATGTTTGAAGATGATGGGACTGCACGCACAAAACTTCTCTCACATCTTGGTTTCAATGTA
                            || |  |     | ||||| ||   |||  || |    || ||    ||  ||   |   |  |   || |     |||||||| ||||| ||||||||||||||||| |||| | |||||||||| || |  |    || | | |||||| | ||  | |||||||| ||| |   |
----------------------------gtat-gtacatctcctttagtagaacta--ctgacat-ttgcatgaagactaactttatgcgatgcctgcttgatcagATCTGATGAGGAGAGAGAAACATGGGGCTTCTTGATGATTATGTTTGAGGACGGGGATTTTGTAAGGACAAAATTGCTTGCTCATCTTGGCTTCGAACCA

upper sequence: GLYMA09G36050.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G035985_T03 (Zea mays), 3'ss of exon 12
gtgagttctattcatgaagtgcaacattgtctcatggtctttctttattatgcctaacctaatccgttacacttggaacaatgctgatcactttttgatgttatagATCTGAGGAGGAAAGAGAAACATGGGGCTTTTTGAAGGTTATGTTTGAAGATGATGGGACTGCACGCACAAAACTTCTCTCACATCTTGGTTTCAATGTA
                                   |||  ||||||| ||    ||          || ||    ||  ||   |      |   || |     |||||||| ||||| |||||||| |||||||| || | |||||||||||| || |  |    |||| | |||||| | ||  | |||||||| ||| |   |
--------------------------------gtaggtgcttctttagtagaaatactactgatatttgcatggagactaactttatgtgatgcatgtttgatcagATCTGACGAGGAGAGAGAAACCTGGGGCTTCTTAAGGGTTATGTTTGAGGACGGGGATTTTGCAAGGACAAAATTGCTTGCTCATCTTGGCTTCGAACCA

upper sequence: GLYMA09G36050.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv13s0158g00140.t01 (Vitis vinifera), 3'ss of exon 12
--gtgagttctattcatgaagtgcaacattgtctcatggtctttctttattatgcctaacc-taatccgttacacttggaacaatgctgatcact----ttttga--tgtt---atagATCTGAGGAGGAAAGAGAAACATGGGGCTTTTTGAAGGTTATGTTTGAAGATGATGGGACTGCACGCACAAAACTTCTCTCACATCTTGGTTTCAATGTA
   ||     ||| ||  ||  | || |||      |  | | | ||| | || | |     ||||    |  |||||  ||  |||   || ||    ||||||  |||    | ||||||  ||| || ||||||||||||||||| |||||||||||||||||||||||||| || ||| |  |||| || ||| | || ||||||||  || | 
gtatgccacttatcca-aaaacgaaatatttctctttcatttatttttttaatccattctagtaatgaactg-acttgttactttgcatttctctgttcttttgagttgtctgaacagATCTTCGGATGACAGAGAAACATGGGGCTTCTTGAAGGTTATGTTTGAAGATGATGGAACAGCAAGGTCAAAGCTGCTCACTCACCTTGGTTTTGATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctaacctaatccgttacacttggaacaatgctgatcactttttgatgttatagATCTGAGGAGGAAAGAGAAACATGGGGCTTTTTGAAGGTTATGTTTGAAGATGATGGGACTGCACGCACAAAACTTCTCTCACATCTTGGTTTCAATGTA
                                       ctttttg  CT-rich tract
                                        tttttgatgttata  TA-rich tract