Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actctaaaagcaaaaactagtatatttgtatagattaaaaagatatttaaacctatcacatatgaatatatagctgacttgtctgcataaaatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCATCAGATAGATTGCCCTTACCCTTGCAACCCCACTTGTCACAACCGTGTTT

Basic information

species Glycine max
transcript GLYMA09G35050.4
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10709683|gb|BF009407.1|BF009407
EST:     AAATGCATGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAACAGACA                         ACAATTGCAAAGGCTGTAGCAGATTGGTTT-ATGAAAGAAGGCCTT-CCAT
genomic: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
EST: gi|9984674|gb|BE658782.1|BE658782
EST:     AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACA                         ACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
genomic: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
EST: gi|14516395|gb|BI095067.1|BI095067
EST:     CAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACA                         ACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
genomic: CAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
EST: gi|6200906|gb|AW153006.1|AW153006
EST:     AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACA                         ACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
genomic: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
EST: gi|14516396|gb|BI095068.1|BI095068
EST:     AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACA                         ACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
genomic: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
EST: gi|7589608|gb|AW705379.1|AW705379
EST:     AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACA                         ACAATTGCAAAAGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
genomic: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
EST: gi|15285962|gb|BI469853.1|BI469853
EST:     AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACA                         ACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
genomic: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
EST: gi|14990535|gb|BI316208.1|BI316208
EST:     AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACA                         ACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
genomic: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaacctatcacatatgaatatatagctgacttgtctgcataaaatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCATCAGATAGATTGCCCTTACCCTTGCAACCCCACTTGTCACAACCGTGTTT
                          agctgac  putative branch site (score: 3)
                                               tttttc  putative PPT
            acatatgaatatata  TA-rich tract