1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...actctaaaagcaaaaactagtatatttgtatagattaaaaagatatttaaacctatcacatatgaatatatagctgacttgtctgcataaaatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCATCAGATAGATTGCCCTTACCCTTGCAACCCCACTTGTCACAACCGTGTTT
species | Glycine max |
transcript | GLYMA09G35050.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AAATGCAGGAGACATGGTTGAGAAGTGGCTCTCCAGAGCTGAAAAAGACA ACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCATEST: gi|10709683|gb|BF009407.1|BF009407
genomic: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
EST: AAATGCATGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAACAGACA ACAATTGCAAAGGCTGTAGCAGATTGGTTT-ATGAAAGAAGGCCTT-CCATEST: gi|7589608|gb|AW705379.1|AW705379
genomic: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
EST: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACA ACAATTGCAAAAGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCATEST: gi|14990535|gb|BI316208.1|BI316208
genomic: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
EST: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACA ACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
genomic: AAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGAAAAAGACAgtaagaagct ... aatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCAT
tttaaacctatcacatatgaatatatagctgacttgtctgcataaaatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCATCAGATAGATTGCCCTTACCCTTGCAACCCCACTTGTCACAACCGTGTTT
agctgac putative branch site (score: 3)
tttttc putative PPT
acatatgaatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actctaaaagcaaaaactagtatatttgtatagattaaaaagatatttaaacctatcacatatgaatatatagctgacttgtctgcataaaatttttcagACAATTGCAAAGGCTGTAGCAGATTGGTTTTATGAAAGAAGGCCTTTCCATCAGATAGATTGCCCTTACCCTTGCAACCCCACTTGTCACAACCGTGTTT
- - - - - caaaaac
- - - - - - - - - - - - - - - - - - aaaaaga